Factsheet for HORVU3Hr1G020100.9

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G017030.1
HORVU5Hr1G031870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	HORVU4Hr1G017030.1	AT4G26850.1	17982713
AT2G02710.1	HORVU5Hr1G031870.1	AT4G26850.1	17982713
AT2G02710.1	HORVU4Hr1G017030.1	AT5G55120.1	17982713
AT2G02710.1	HORVU5Hr1G031870.1	AT5G55120.1	17982713
AT2G02710.1	HORVU4Hr1G017030.1	AT5G55120.1	21798944
AT2G02710.1	HORVU5Hr1G031870.1	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G129800.4	Wheat	cytosol	70.77	86.48
TraesCS3A01G111100.2	Wheat	cytosol	70.56	85.79
TraesCS3D01G113100.2	Wheat	cytosol	69.31	83.0
Os01t0186200-01	Rice	cytosol	62.21	75.44
KXG31655	Sorghum	cytosol	57.2	68.5
Zm00001d039530_P001	Maize	cytosol	56.78	67.66
GSMUA_Achr5P06380_001	Banana	nucleus	43.63	53.45
KRH58039	Soybean	cytosol	19.42	44.93
CDY03044	Canola	nucleus	36.33	44.62
VIT_01s0026g01590.t01	Wine grape	nucleus	36.95	44.58
KRH74769	Soybean	cytosol	35.91	44.33
CDY45203	Canola	cytosol, nucleus, plastid	36.12	44.25
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	36.12	44.25
KRH69365	Soybean	cytosol	35.91	43.54
AT2G02710.1	Thale cress	nucleus	35.07	42.11
PGSC0003DMT400045475	Potato	nucleus	34.45	41.46
Solyc05g007020.2.1	Tomato	nucleus	34.45	41.46
Solyc01g010480.2.1	Tomato	cytosol	31.94	39.74
PGSC0003DMT400068851	Potato	nucleus	31.11	38.6
KRH07406	Soybean	cytosol	14.82	26.39

Protein Annotations

EnsemblPlants:HORVU3Hr1G020100.9	EnsemblPlantsGene:HORVU3Hr1G020100	Gene3D:3.30.450.20	InterPro:IPR000014	InterPro:PAC	InterPro:PAS
InterPro:PAS-like_dom_sf	PANTHER:PTHR45497	PFAM:PF13426	PFscan:PS50112	SEG:seg	SMART:SM00086
SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI000B472378	UniProt:A0A287KCU2	MapMan:26.1.2.4.1	:

Description

No Description!

Coordinates

chrchr3H:+:61066060..61070037

Molecular Weight (calculated)

52602.7 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.387

Length

479 amino acids

Sequence
(BLAST)

001: PLSLVRTIGG SPRKPPASHR HRYLIISSPS PSPSHHSQRA GPASHAQRWR PADETELQPL AQSRKSQTGH AILQPCPARP TLPPPAQIFS PHPPPPAPAP
101: RRSRHRSGAP FPAGAMEGDE PRRLAASLTA RYSEWVLEEL DELQGSFLLT DPAMPGHPIV YASRGLASLT GYPRRDLLGR NARLFQGAAT DRAAVSGLRE
201: AVRAQRAHQV AILNYRRDGA PHWVLLHLAP VFHAADGRVL HFLAVQVPIA ASPRRRPGRP APFAACREEA RGEEELPCAS HVGEVFVDID KRGMETRRRL
301: EAEEPRIASG CDKEMALSTA NSIFSTLNRY SKLTGLVVCE RRCDSVGIPA LSSSLNLSLG RIKQSFVLTD CHLPDMPIVY ASDAFLSLTG YSREEILGCN
401: CRFLNGPGTS AEVLEEINRH ICREEACTVH LLNYRKDGST FRDLLHVSPI RNSSGKVAFH VWVHLDESAK NDFSGLTPE

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.