CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98713
KRH14364
KRH46222
KRH73776

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	KRG98713	AT4G26850.1	17982713
AT2G02710.1	KRH14364	AT4G26850.1	17982713
AT2G02710.1	KRH46222	AT4G26850.1	17982713
AT2G02710.1	KRH73776	AT4G26850.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	17982713
AT2G02710.1	KRH14364	AT5G55120.1	17982713
AT2G02710.1	KRH46222	AT5G55120.1	17982713
AT2G02710.1	KRH73776	AT5G55120.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	21798944
AT2G02710.1	KRH14364	AT5G55120.1	21798944
AT2G02710.1	KRH46222	AT5G55120.1	21798944
AT2G02710.1	KRH73776	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69365	Soybean	cytosol	91.24	89.62
KRH58039	Soybean	cytosol	37.63	70.53
VIT_01s0026g01590.t01	Wine grape	nucleus	62.37	60.96
CDY03044	Canola	nucleus	58.76	58.46
CDY45203	Canola	cytosol, nucleus, plastid	58.51	58.06
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	58.25	57.8
PGSC0003DMT400045475	Potato	nucleus	58.76	57.29
Solyc05g007020.2.1	Tomato	nucleus	58.25	56.78
AT2G02710.1	Thale cress	nucleus	57.73	56.14
PGSC0003DMT400068851	Potato	nucleus	54.38	54.66
Solyc01g010480.2.1	Tomato	cytosol	54.12	54.55
GSMUA_Achr5P06380_001	Banana	nucleus	54.64	54.22
KRH07406	Soybean	cytosol	36.6	52.79
TraesCS3B01G129800.4	Wheat	cytosol	48.2	47.7
TraesCS3A01G111100.2	Wheat	cytosol	48.2	47.46
Os01t0186200-01	Rice	cytosol	47.42	46.58
TraesCS3D01G113100.2	Wheat	cytosol	47.16	45.75
KXG31655	Sorghum	cytosol	45.88	44.5
Zm00001d039530_P001	Maize	cytosol	45.1	43.53
HORVU3Hr1G020100.9	Barley	mitochondrion	44.33	35.91

Protein Annotations

EntrezGene:100785562	MapMan:26.1.2.4.1	Gene3D:3.30.450.20	EMBL:ACUP02000070	EnsemblPlantsGene:GLYMA_01G042300	GO:GO:0000155
GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
UniProt:I1J5K5	InterPro:IPR000014	InterPro:IPR000700	EMBL:KC795557	EnsemblPlants:KRH74769	ProteinID:KRH74769
ProteinID:KRH74769.1	InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426
PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785
TIGRFAMs:TIGR00229	UniParc:UPI000233771D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:4613542..4618432

Molecular Weight (calculated)

43105.6 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.214

Length

388 amino acids

Sequence
(BLAST)

001: MPMELELGST TIQRSFNTRY TRHARDSLDE LPDSFTITDP SIPGHPIVFA SPGFLKLTGY AAREVLGRPA AIFQGPRTSR KSVIEIREAV REERNAQVVL
101: LNYRKDGTPF WMLFRVCPVF SSDGGAVVHF VAVQVPLQKK EGSGVRDFGF GCCRKEVCAD SLAEIGRVCS LEQVLEPDVR ELEREEPCEA SDEEKRSAVN
201: AMDNIFSVLT HYSEATGRLV CQKRCSIPDV GLLSTSLIIS LGRIKQSFVL TNPRLSDMPI VYASDAFLKL TGYAKNEVLG RNCRFLGGTD TDTSTLHLIR
301: ESIKTEQPCT VRILNYRKDK SSFWNFLHIS PVRDASGKVA YFVGVQIEDS NKNDDSHCLS PEKRQLNVVG VVKVAVRSLS MTVGSSKS

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.