Factsheet for PGSC0003DMT400045475

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400069484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	PGSC0003DMT400069484	AT4G26850.1	17982713
AT2G02710.1	PGSC0003DMT400069484	AT5G55120.1	17982713
AT2G02710.1	PGSC0003DMT400069484	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007020.2.1	Tomato	nucleus	96.73	96.73
PGSC0003DMT400068851	Potato	nucleus	66.08	68.13
VIT_01s0026g01590.t01	Wine grape	nucleus	63.57	63.73
KRH74769	Soybean	cytosol	57.29	58.76
KRH69365	Soybean	cytosol	57.54	57.97
CDY03044	Canola	nucleus	55.78	56.92
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	55.28	56.27
CDY45203	Canola	cytosol, nucleus, plastid	55.28	56.27
AT2G02710.1	Thale cress	nucleus	54.52	54.39
GSMUA_Achr5P06380_001	Banana	nucleus	51.76	52.69
KRH58039	Soybean	cytosol	27.39	52.66
Os01t0186200-01	Rice	cytosol	46.73	47.09
TraesCS3B01G129800.4	Wheat	cytosol	44.22	44.9
TraesCS3A01G111100.2	Wheat	cytosol	43.97	44.42
KXG31655	Sorghum	cytosol	44.47	44.25
TraesCS3D01G113100.2	Wheat	cytosol	44.22	44.0
Zm00001d039530_P001	Maize	cytosol	42.71	42.29
HORVU3Hr1G020100.9	Barley	mitochondrion	41.46	34.45
KRH07406	Soybean	cytosol	22.61	33.46

Protein Annotations

EntrezGene:102598309	MapMan:26.1.2.4.1	Gene3D:3.30.450.20	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	InterPro:IPR000014	InterPro:IPR000700
UniProt:M1BHQ5	InterPro:PAC	InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426
EnsemblPlantsGene:PGSC0003DMG400017642	PGSC:PGSC0003DMG400017642	EnsemblPlants:PGSC0003DMT400045475	PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR45497
SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0002951848	RefSeq:XP_006357261.1
SEG:seg	:	:	:	:	:

Description

PAS/LOV protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400017642]

Coordinates

chr5:+:5982304..5987996

Molecular Weight (calculated)

44414.0 Da

IEP (calculated)

8.333

GRAVY (calculated)

-0.317

Length

398 amino acids

Sequence
(BLAST)

001: MESQLGLIEK SFNVKYSDGV REALDELPDS FTITDPSISG HPIVYASRGF LKVFGYSKNE VLGKNGRVFQ GPKTDRRSVM AIREAIREER GIQISLLNYR
101: KDGTPFWMLF NMCPVYSEKD GRVVHFLGIQ VPILRRRNSL GGGIGRNGGV CYDGGNCREY VYKCCRREVC SNSTMEVDRA LSVDTVSGLD HTEVDVEGPC
201: EASDQEKTKA SVAVNNIMSV LANYSELNGR LVSDRRCCQS GTSLLSASLN ISFGRIKQSF VLTDAHLPDM PIVYASDAFL KLTGFLRHEV LGRNCRFLSG
301: EDTDRGTQFQ IKQCIQNEQP YTVYILNYRK DGTSFWNFLH ISPIRSASGK VAYFVGIQIE DTNEAREKQG LNPEMRHRSV VAAVKVAVRG WSMGASTS

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.