CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES16792

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	EES16792	AT4G26850.1	17982713
AT2G02710.1	EES16792	AT5G55120.1	17982713
AT2G02710.1	EES16792	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039530_P001	Maize	cytosol	89.75	89.3
Os01t0186200-01	Rice	cytosol	76.25	77.22
TraesCS3D01G113100.2	Wheat	cytosol	77.0	77.0
TraesCS3A01G111100.2	Wheat	cytosol	74.75	75.89
TraesCS3B01G129800.4	Wheat	cytosol	74.25	75.77
HORVU3Hr1G020100.9	Barley	mitochondrion	68.5	57.2
GSMUA_Achr5P06380_001	Banana	nucleus	55.25	56.52
KRH74769	Soybean	cytosol	44.5	45.88
AT2G02710.1	Thale cress	nucleus	44.75	44.86
PGSC0003DMT400045475	Potato	nucleus	44.25	44.47
KRH58039	Soybean	cytosol	23.0	44.44
CDY03044	Canola	nucleus	43.25	44.36
VIT_01s0026g01590.t01	Wine grape	nucleus	44.0	44.33
Solyc05g007020.2.1	Tomato	nucleus	44.0	44.22
KRH69365	Soybean	cytosol	43.0	43.54
CDY45203	Canola	cytosol, nucleus, plastid	42.5	43.48
Solyc01g010480.2.1	Tomato	cytosol	41.75	43.38
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	42.25	43.22
PGSC0003DMT400068851	Potato	nucleus	41.5	43.01
KRH07406	Soybean	cytosol	17.0	25.28

Protein Annotations

EnsemblPlants:KXG31655	EnsemblPlantsGene:SORBI_3003G037300	Gene3D:3.30.450.20	InterPro:IPR000014	InterPro:PAC	InterPro:PAS
InterPro:PAS-like_dom_sf	PANTHER:PTHR45497	PFAM:PF13426	PFscan:PS50112	ProteinID:KXG31655	ProteinID:KXG31655.1
SEG:seg	SMART:SM00086	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0003C66735	UniProt:A0A1B6Q1A5
MapMan:26.1.2.4.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3504460..3508169

Molecular Weight (calculated)

42617.9 Da

IEP (calculated)

6.942

GRAVY (calculated)

0.074

Length

400 amino acids

Sequence
(BLAST)

001: MAATSGAPVP DDNGHGRLAS SLTARYSDWV LEALDELPGS FLLTDPALPG HPIVYASGGL AALTGYAPRD VLGRNARLFQ GAATDRAAVA GVREAVRAHR
101: AHQAALLNYR RDGAPHWVLL HLAPVFHARD GTLLHFLAVQ VPIAPAAATR GATCHATGHL LAACRDEASR VAEDFPCSTH AAKVFVDMDK RGLEAEELRV
201: ASDCEKEMAT SMANNIVSVL NRYSKLTGLV VSSQRCSSVG IPALSSSLNL SLGRIKQSFV LTDSRLPDMP IIYASDAFTS LTGYSREEIL GCNCKVLNGP
301: GTSLEVLEEI NQHICSEQAC TVDLLSYRKD GSSFCDLLHV SPIRDASGKV AFHIWVHLDM GAKHEFNGLV PEVWLLGAVG AVRVAVRGLS ASGSLLRPSQ

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.