Factsheet for GSMUA_Achr5P06380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P07340_001
GSMUA_Achr6P12830_001
GSMUA_Achr6P17590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	GSMUA_Achr10P...	AT4G26850.1	17982713
AT2G02710.1	GSMUA_Achr6P07340_001	AT4G26850.1	17982713
AT2G02710.1	GSMUA_Achr6P12830_001	AT4G26850.1	17982713
AT2G02710.1	GSMUA_Achr6P17590_001	AT4G26850.1	17982713
AT2G02710.1	GSMUA_Achr10P...	AT5G55120.1	17982713
AT2G02710.1	GSMUA_Achr6P07340_001	AT5G55120.1	17982713
AT2G02710.1	GSMUA_Achr6P12830_001	AT5G55120.1	17982713
AT2G02710.1	GSMUA_Achr6P17590_001	AT5G55120.1	17982713
AT2G02710.1	GSMUA_Achr10P...	AT5G55120.1	21798944
AT2G02710.1	GSMUA_Achr6P07340_001	AT5G55120.1	21798944
AT2G02710.1	GSMUA_Achr6P12830_001	AT5G55120.1	21798944
AT2G02710.1	GSMUA_Achr6P17590_001	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0186200-01	Rice	cytosol	58.82	58.23
VIT_01s0026g01590.t01	Wine grape	nucleus	58.82	57.93
TraesCS3A01G111100.2	Wheat	cytosol	57.8	57.36
TraesCS3B01G129800.4	Wheat	cytosol	57.29	57.14
TraesCS3D01G113100.2	Wheat	cytosol	57.29	56.0
KXG31655	Sorghum	cytosol	56.52	55.25
CDY03044	Canola	nucleus	54.73	54.87
KRH74769	Soybean	cytosol	54.22	54.64
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	54.48	54.48
KRH69365	Soybean	cytosol	54.99	54.43
CDY45203	Canola	cytosol, nucleus, plastid	54.22	54.22
Zm00001d039530_P001	Maize	cytosol	54.73	53.23
AT2G02710.1	Thale cress	nucleus	54.22	53.13
Solyc05g007020.2.1	Tomato	nucleus	53.2	52.26
PGSC0003DMT400045475	Potato	nucleus	52.69	51.76
PGSC0003DMT400068851	Potato	nucleus	50.13	50.78
Solyc01g010480.2.1	Tomato	cytosol	49.36	50.13
KRH58039	Soybean	cytosol	25.58	48.31
HORVU3Hr1G020100.9	Barley	mitochondrion	53.45	43.63
KRH07406	Soybean	cytosol	23.53	34.2

Protein Annotations

EnsemblPlants:GSMUA_Achr5P06380_001	EnsemblPlants:GSMUA_Achr5T06380_001	EnsemblPlantsGene:GSMUA_Achr5G06380_001	Gene3D:3.30.450.20	InterPro:IPR000014	InterPro:PAC
InterPro:PAS	InterPro:PAS-like_dom_sf	PANTHER:PTHR45497	PFAM:PF13426	PFscan:PS50112	SEG:seg
SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI000295BC31	UniProt:M0SW67
MapMan:26.1.2.4.1	:	:	:	:	:

Description

Protein TWIN LOV 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06380_001]

Coordinates

chr5:-:4666029..4669314

Molecular Weight (calculated)

43076.4 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.165

Length

391 amino acids

Sequence
(BLAST)

001: MAGCSRRLID QSLTARYSDW IAEALDEIQG CFLITDPGVA GHPIVFASHG FLAMSGYSRE EVLGRNGRMF QGPATNRRSV LEIREAIREE RTLQISLLNY
101: RKDGTPHWIL FHLFPVFGVD DGRVAHFVAV QVPIPRRSRS LSEARCGGAR GRLFGACRNE VRSDCDLGCN LAADLFVDVD NRGLEAEESR EASEQEKERA
201: SDAANSILSA LTQYSKLTGR VVSSQRSRLA GISPLSSSLI LSLGRIKQSF VLTDPQLPDM PIVYASDEFL SLTGYSRHEI LGHNYEFLNG PDTEVEVLHQ
301: IRQSIQVECA CTVRLLNYRK DGSLFWNLLH VSPVRNASGK VAFYVNVQID ENAKSDGLGL SPHMRQLGVV GAVKVAVRSL SLCAGPSRPS S

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.