Factsheet for VIT_01s0026g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0090g01000.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	VIT_19s0090g01000.t01	AT4G26850.1	17982713
AT2G02710.1	VIT_19s0090g01000.t01	AT5G55120.1	17982713
AT2G02710.1	VIT_19s0090g01000.t01	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007020.2.1	Tomato	nucleus	63.73	63.57
PGSC0003DMT400045475	Potato	nucleus	63.73	63.57
KRH74769	Soybean	cytosol	60.96	62.37
CDY03044	Canola	nucleus	60.45	61.54
CDY45203	Canola	cytosol, nucleus, plastid	60.2	61.13
KRH69365	Soybean	cytosol	60.45	60.76
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	59.45	60.36
AT2G02710.1	Thale cress	nucleus	59.7	59.4
GSMUA_Achr5P06380_001	Banana	nucleus	57.93	58.82
Solyc01g010480.2.1	Tomato	cytosol	56.93	58.7
PGSC0003DMT400068851	Potato	nucleus	56.42	58.03
KRH58039	Soybean	cytosol	28.46	54.59
Os01t0186200-01	Rice	cytosol	49.37	49.62
TraesCS3B01G129800.4	Wheat	cytosol	47.86	48.47
TraesCS3A01G111100.2	Wheat	cytosol	47.36	47.72
TraesCS3D01G113100.2	Wheat	cytosol	46.6	46.25
KXG31655	Sorghum	cytosol	44.33	44.0
Zm00001d039530_P001	Maize	cytosol	43.83	43.28
KRH07406	Soybean	cytosol	26.2	38.66
HORVU3Hr1G020100.9	Barley	mitochondrion	44.58	36.95

Protein Annotations

EntrezGene:100260420	wikigene:100260420	MapMan:26.1.2.4.1	Gene3D:3.30.450.20	ProteinID:CCB56582	ProteinID:CCB56582.1
UniProt:F6HPF4	EMBL:FN596002	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000014
EntrezGene:LOC100260420	wikigene:LOC100260420	InterPro:PAC	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF13426
PFscan:PS50112	PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGR:TC67574
TIGRFAMs:TIGR00229	UniParc:UPI00015CA2EF	ArrayExpress:VIT_01s0026g01590	EnsemblPlantsGene:VIT_01s0026g01590	EnsemblPlants:VIT_01s0026g01590.t01	unigene:Vvi.871
RefSeq:XP_002269901	RefSeq:XP_002269901.1	RefSeq:XP_010652459.1	RefSeq:XP_010652464.1	RefSeq:XP_010652469.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:10683546..10690630

Molecular Weight (calculated)

44205.7 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.279

Length

397 amino acids

Sequence
(BLAST)

001: MESQLALIEQ SFNYRYSVWV REALDELPDN FTITDPSISG HPIVFASRGF LKMSGYSKEE VIGKNGRAFQ GPGTSRRSIT EIQEAIQEER TIQTILLNYR
101: KDGTPIWMLF HMSPVFSKED GRVIHFVAVQ VPMSRKPRWS GSGPGRDGVC EDGCRSRDIV FGSCRREVCS DSVLELEHVL AFESLFDSDN RDDEEPREAS
201: DQEKRRAAAA VNNILSLLTH YSELTGKLVC EKRCTLSGIG LLGASLIISL GRIKQSFVLT DPHLPEMPIV YASDAFLKLT GYARHEVLGC QCMFLSGVDT
301: DPSTLLQVKE SIQTEQACTV RILNYRKDRS SFWNLLHISP VRNASGKIAY SVWVQMEEGC GYQDAQGLSP EMRQRSTVGA VKVAVRSSSM GAGPSKS

Best Arabidopsis Sequence Match ( AT2G02710.2 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYR KDKSSFWNLL HISPVRNASG KTAYFVGVQV EASCRNTEIK ELRPETRQLS VVGAVRVAVR SSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.