CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98713
KRH14364
KRH46222
KRH73776

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	KRG98713	AT4G26850.1	17982713
AT2G02710.1	KRH14364	AT4G26850.1	17982713
AT2G02710.1	KRH46222	AT4G26850.1	17982713
AT2G02710.1	KRH73776	AT4G26850.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	17982713
AT2G02710.1	KRH14364	AT5G55120.1	17982713
AT2G02710.1	KRH46222	AT5G55120.1	17982713
AT2G02710.1	KRH73776	AT5G55120.1	17982713
AT2G02710.1	KRG98713	AT5G55120.1	21798944
AT2G02710.1	KRH14364	AT5G55120.1	21798944
AT2G02710.1	KRH46222	AT5G55120.1	21798944
AT2G02710.1	KRH73776	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69365	Soybean	cytosol	75.36	39.49
KRH74769	Soybean	cytosol	70.53	37.63
KRH07406	Soybean	cytosol	38.16	29.37
VIT_01s0026g01590.t01	Wine grape	nucleus	54.59	28.46
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	52.66	27.88
CDY03044	Canola	nucleus	51.69	27.44
PGSC0003DMT400045475	Potato	nucleus	52.66	27.39
CDY45203	Canola	cytosol, nucleus, plastid	51.69	27.37
Solyc01g010480.2.1	Tomato	cytosol	49.76	26.75
PGSC0003DMT400068851	Potato	nucleus	49.76	26.68
Solyc05g007020.2.1	Tomato	nucleus	51.21	26.63
AT2G02710.1	Thale cress	nucleus	50.24	26.07
GSMUA_Achr5P06380_001	Banana	nucleus	48.31	25.58
Os01t0186200-01	Rice	cytosol	45.89	24.05
TraesCS3B01G129800.4	Wheat	cytosol	45.41	23.98
TraesCS3A01G111100.2	Wheat	cytosol	45.41	23.86
TraesCS3D01G113100.2	Wheat	cytosol	45.41	23.5
KXG31655	Sorghum	cytosol	44.44	23.0
Zm00001d039530_P001	Maize	cytosol	43.0	22.14
HORVU3Hr1G020100.9	Barley	mitochondrion	44.93	19.42

Protein Annotations

EMBL:ACUP02003191	EnsemblPlants:KRH58039	EnsemblPlantsGene:GLYMA_05G102700	Gene3D:3.30.450.20	InterPro:IPR000014	InterPro:PAS
InterPro:PAS-like_dom_sf	PANTHER:PTHR45497	PFAM:PF13426	PFscan:PS50112	ProteinID:KRH58039	ProteinID:KRH58039.1
SEG:seg	SUPFAM:SSF55785	UniParc:UPI0006EDE7BE	UniProt:A0A0R0JTJ5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:-:27184520..27187347

Molecular Weight (calculated)

22917.9 Da

IEP (calculated)

5.911

GRAVY (calculated)

0.301

Length

207 amino acids

Sequence
(BLAST)

001: MVDELLDELG FTITDPSIPG HPIVFANPSF LKLTGYSLRE VLGWPAAIFS GPLTSQKFVI LLNYHRDGMP FWMLFCVSPI FSSDGGAVVH FIVVQREESC
101: EASDDEKRSV VTAMDCIFSV LTHYGEATGR LVCRKRSSIP DVGLLSTSLI ISLGRIKQSF VLTNPHLPDM PTVYASDTLL NLTGFKVVTL YKLDQVQMNL
201: LIFSHSS

Best Arabidopsis Sequence Match ( AT2G02710.1 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.