CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89298
CDX92792
CDX97369
CDY06608
CDY06609
CDY14296
CDY20787
CDY29254
CDY46677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	CDX89298	AT4G26850.1	17982713
AT2G02710.1	CDX92792	AT4G26850.1	17982713
AT2G02710.1	CDX97369	AT4G26850.1	17982713
AT2G02710.1	CDY14296	AT4G26850.1	17982713
AT2G02710.1	CDY29254	AT4G26850.1	17982713
AT2G02710.1	CDY46677	AT4G26850.1	17982713
AT2G02710.1	CDY06608	AT5G55120.1	17982713
AT2G02710.1	CDY06609	AT5G55120.1	17982713
AT2G02710.1	CDY20787	AT5G55120.1	17982713
AT2G02710.1	CDY06608	AT5G55120.1	21798944
AT2G02710.1	CDY06609	AT5G55120.1	21798944
AT2G02710.1	CDY20787	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	97.95	97.95
CDY03044	Canola	nucleus	96.68	96.92
AT2G02710.1	Thale cress	nucleus	81.84	80.2
VIT_01s0026g01590.t01	Wine grape	nucleus	61.13	60.2
KRH74769	Soybean	cytosol	58.06	58.51
KRH69365	Soybean	cytosol	57.03	56.46
PGSC0003DMT400045475	Potato	nucleus	56.27	55.28
Solyc05g007020.2.1	Tomato	nucleus	56.01	55.03
GSMUA_Achr5P06380_001	Banana	nucleus	54.22	54.22
PGSC0003DMT400068851	Potato	nucleus	52.94	53.63
Solyc01g010480.2.1	Tomato	cytosol	51.92	52.73
KRH58039	Soybean	cytosol	27.37	51.69
Os01t0186200-01	Rice	cytosol	48.34	47.85
TraesCS3B01G129800.4	Wheat	cytosol	46.8	46.68
TraesCS3A01G111100.2	Wheat	cytosol	46.55	46.19
TraesCS3D01G113100.2	Wheat	cytosol	46.55	45.5
KXG31655	Sorghum	cytosol	43.48	42.5
Zm00001d039530_P001	Maize	cytosol	42.2	41.04
KRH07406	Soybean	cytosol	25.83	37.55
HORVU3Hr1G020100.9	Barley	mitochondrion	44.25	36.12

Protein Annotations

MapMan:26.1.2.4.1	Gene3D:3.30.450.20	GO:A0A078I7U1	UniProt:A0A078I7U1	EnsemblPlants:CDY45203	ProteinID:CDY45203
ProteinID:CDY45203.1	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00081632001	InterPro:IPR000014	InterPro:IPR000700	InterPro:PAC
InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112	PFscan:PS50113
PANTHER:PTHR45497	SMART:SM00086	SMART:SM00091	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0004EF3E40
SEG:seg	:	:	:	:	:

Description

BnaA06g34070DBnaA06g34070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7U1]

Coordinates

chrLK032617:+:199240..201657

Molecular Weight (calculated)

43769.7 Da

IEP (calculated)

8.116

GRAVY (calculated)

-0.178

Length

391 amino acids

Sequence
(BLAST)

001: MSITQSSPSL FTTATEEKEG AFNARYSLWI KEALDELPHS FTITDPFISG HPIVFASPGF LKMTGYSREE VIGRNGRAFQ GPKTNRRSIM EIREAIREER
101: PVQVSILNYR KSGSPFWMLF HMIPVFGNDD GRVIHFVAVQ VPISGQKMRN GSGLSELVFG SCRREVCLGS YVHQERALPV ECDEQELENW EHCEASESEK
201: LKSAEAVGNV LSVLTRYSEF AGRLVCGKRN CLRVADCLSS SLVISLGRIK QSFVLTNPCL PDMPIVYASD AFLTLTGYKR HEVLGQNCRF LSGVDTDSSV
301: LYEMKECILK GKPCTVQILN YSNRKDKSTF WNLLHISPVR NASGKTAYFV GVQMEASCKD IESKELRPET RQLSVVGAVR VAVRSSFMVT C

Best Arabidopsis Sequence Match ( AT2G02710.1 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.