Factsheet for TraesCS3B01G129800.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G201200.1
TraesCS4B01G105300.2
TraesCS4D01G102200.1
TraesCS5A01G107800.2
TraesCS5B01G111700.2
TraesCS5D01G122900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02710.1	TraesCS4A01G201200.1	AT4G26850.1	17982713
AT2G02710.1	TraesCS4B01G105300.2	AT4G26850.1	17982713
AT2G02710.1	TraesCS4D01G102200.1	AT4G26850.1	17982713
AT2G02710.1	TraesCS5A01G107800.2	AT4G26850.1	17982713
AT2G02710.1	TraesCS5B01G111700.2	AT4G26850.1	17982713
AT2G02710.1	TraesCS5D01G122900.1	AT4G26850.1	17982713
AT2G02710.1	TraesCS4A01G201200.1	AT5G55120.1	17982713
AT2G02710.1	TraesCS4B01G105300.2	AT5G55120.1	17982713
AT2G02710.1	TraesCS4D01G102200.1	AT5G55120.1	17982713
AT2G02710.1	TraesCS5A01G107800.2	AT5G55120.1	17982713
AT2G02710.1	TraesCS5B01G111700.2	AT5G55120.1	17982713
AT2G02710.1	TraesCS5D01G122900.1	AT5G55120.1	17982713
AT2G02710.1	TraesCS4A01G201200.1	AT5G55120.1	21798944
AT2G02710.1	TraesCS4B01G105300.2	AT5G55120.1	21798944
AT2G02710.1	TraesCS4D01G102200.1	AT5G55120.1	21798944
AT2G02710.1	TraesCS5A01G107800.2	AT5G55120.1	21798944
AT2G02710.1	TraesCS5B01G111700.2	AT5G55120.1	21798944
AT2G02710.1	TraesCS5D01G122900.1	AT5G55120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G111100.2	Wheat	cytosol	97.19	96.7
TraesCS3D01G113100.2	Wheat	cytosol	93.11	91.25
Os01t0186200-01	Rice	cytosol	82.91	82.28
KXG31655	Sorghum	cytosol	75.77	74.25
Zm00001d039530_P001	Maize	cytosol	74.74	72.89
HORVU3Hr1G020100.9	Barley	mitochondrion	86.48	70.77
GSMUA_Achr5P06380_001	Banana	nucleus	57.14	57.29
KRH74769	Soybean	cytosol	47.7	48.2
VIT_01s0026g01590.t01	Wine grape	nucleus	48.47	47.86
CDY03044	Canola	nucleus	47.19	47.44
KRH69365	Soybean	cytosol	47.19	46.84
CDY45203	Canola	cytosol, nucleus, plastid	46.68	46.8
Bra024812.1-P	Field mustard	cytosol, nucleus, plastid	46.43	46.55
KRH58039	Soybean	cytosol	23.98	45.41
AT2G02710.1	Thale cress	nucleus	46.17	45.36
PGSC0003DMT400045475	Potato	nucleus	44.9	44.22
Solyc05g007020.2.1	Tomato	nucleus	44.9	44.22
Solyc01g010480.2.1	Tomato	cytosol	42.6	43.38
PGSC0003DMT400068851	Potato	nucleus	41.58	42.23
KRH07406	Soybean	cytosol	19.39	28.25

Protein Annotations

EnsemblPlants:TraesCS3B01G129800.4	EnsemblPlantsGene:TraesCS3B01G129800	Gene3D:3.30.450.20	InterPro:IPR000014	InterPro:PAC	InterPro:PAS
InterPro:PAS-like_dom_sf	PANTHER:PTHR45497	PFAM:PF13426	PFscan:PS50112	SEG:seg	SMART:SM00086
SUPFAM:SSF55785	TIGR:cd00130	TIGRFAMs:TIGR00229	MapMan:26.1.2.4.1	:	:

Description

No Description!

Coordinates

chr3B:+:111852265..111855995

Molecular Weight (calculated)

43082.5 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.116

Length

392 amino acids

Sequence
(BLAST)

001: MEGEERRLAA SLTARYSEWV LEELDELRGS FLLTDPAMPG HPIVYASRGL ASLTGYPRRE LLGRNARLFQ GAATDRAAVS GVREAVRTQR AHQVAILNYR
101: RDGSPHWVLL HLAPVFHAAD GRVLHFLAVQ VPIAAAPRRH PGRPAAFAAC REEARGEEEL PCASHVGEVF VDIDKRGLEA EEPRIASVCD KEMALSTANK
201: IFSTLNRYSK LTGLVVCERR CDSVGIPALS SSLNLSLGRI KQSFVLTDRH LPDMPIVYAS DAFLSLTGYS REEILGCNCR FLNGPGTSAE VLEEINQHIC
301: LEEACTVHLL NYRKDGSTFR DLLHVSPIRN SSGKVGLHPF QVAFHVWVHL DESAKHDFSG LTPEVWQLGA VGAVRVAVRS LSASGSLLRP SQ

Best Arabidopsis Sequence Match ( AT2G02710.1 )
(BLAST)

001: MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV
101: QVSLLNYRKS GSPFWMLFHM CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSPTFGSCRR EVCFGNFVCQ DRALPVECDD DEQGLEDWEQ
201: CEASESEKLK ATEAINNVLS ILVHYSELSG RLVCGKRYCL RGVDCLSSSL VISLGRIKQS FVLTNPCLPD MPIIYASDAF LTLTGYKRQE VLGQNCRFLS
301: GVDTDSSVLY EMKECILKGQ SCTVQILNYS NRKDKSSFWN LLHISPVRNA SGKTAYFVGV QVEASCRNTE IKELRPETRQ LSVVGAVRVA VRSSLMVTC

Arabidopsis Description

TLP1Protein TWIN LOV 1 [Source:UniProtKB/Swiss-Prot;Acc:O64511]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.