Factsheet for TraesCS4D01G102200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G111100.2
TraesCS3B01G129800.4
TraesCS3D01G113100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	TraesCS3A01G111100.2	AT2G02710.1	17982713
AT4G26850.1	TraesCS3B01G129800.4	AT2G02710.1	17982713
AT4G26850.1	TraesCS3D01G113100.2	AT2G02710.1	17982713
AT4G26850.1	TraesCS3A01G111100.2	AT2G02710.1	21798944
AT4G26850.1	TraesCS3B01G129800.4	AT2G02710.1	21798944
AT4G26850.1	TraesCS3D01G113100.2	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G201200.1	Wheat	cytosol	99.3	99.3
TraesCS4B01G105300.2	Wheat	cytosol	98.38	98.38
HORVU4Hr1G017030.1	Barley	cytosol	96.75	96.75
CDY06609	Canola	cytosol	14.39	79.49
TraesCS5D01G122900.1	Wheat	cytosol	76.33	76.51
GSMUA_Achr10P...	Banana	cytosol	76.33	75.81
GSMUA_Achr6P12830_001	Banana	cytosol	73.78	73.1
GSMUA_Achr6P07340_001	Banana	cytosol	67.05	67.52
KRH46222	Soybean	cytosol	61.72	66.5
KRH14364	Soybean	cytosol	66.59	65.83
KRG98713	Soybean	cytosol	65.89	65.29
Solyc06g073320.2.1	Tomato	cytosol	65.89	64.99
CDX97369	Canola	cytosol	64.97	64.81
PGSC0003DMT400069484	Potato	cytosol	65.66	64.61
KRH73776	Soybean	cytosol	65.43	64.24
VIT_14s0006g01370.t01	Wine grape	cytosol	64.5	64.2
CDY46677	Canola	cytosol	59.16	64.07
Bra019082.1-P	Field mustard	cytosol	58.7	64.05
CDY29254	Canola	cytosol	64.04	63.74
AT5G55120.1	Thale cress	cytosol	63.57	63.57
CDX92792	Canola	cytosol	58.7	63.41
CDX89298	Canola	cytosol	63.81	63.36
Bra026398.1-P	Field mustard	cytosol	63.81	63.36
CDY14296	Canola	cytosol	64.73	63.27
Bra010424.1-P	Field mustard	cytosol	64.73	63.27
PGSC0003DMT400078783	Potato	cytosol	64.27	63.24
AT4G26850.1	Thale cress	cytosol	64.04	62.44
Solyc02g091510.2.1	Tomato	nucleus	63.34	62.33
VIT_19s0090g01000.t01	Wine grape	cytosol	64.97	61.95
TraesCS3D01G388200.1	Wheat	cytosol	46.17	58.02
CDY06608	Canola	cytosol	24.36	57.07
GSMUA_Achr6P17590_001	Banana	cytosol	27.61	56.67
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	60.79	45.41
Bra035554.1-P	Field mustard	extracellular	61.25	44.59
TraesCS5D01G056000.1	Wheat	cytosol	25.29	29.54

Protein Annotations

EnsemblPlants:TraesCS4D01G102200.1	EnsemblPlantsGene:TraesCS4D01G102200	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0080048
InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	PFAM:PF16269	SEG:seg	MapMan:10.3.1.5

Description

No Description!

Coordinates

chr4D:-:80882292..80885887

Molecular Weight (calculated)

47893.9 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.206

Length

431 amino acids

Sequence
(BLAST)

001: MEMKLTIKRV PTVLSNYQEE GGGGCGRNCL GDCCLPASKL PLYAFKADPK KPAQDDELPT EFFLNSLLLA QWEDRVARGL FRYDVTACET KVIPGELGFV
101: AQLNEGRHLK KRPTEFRVDR VLQPFDSAKF NFTKVGQEEV LFRFENGGGD NSYFLENAPS TEGDHAPSVV AINVSPIEYG HVLLIPRVLD RLPQQIDPES
201: FLLALHMAAE AASPYFRLGY NSLGAFATIN HLHFQAYYLS VPFPVEKAPT KKIPLAKCAL NSGVKVSKLT NFPVRGLVFE RGNTLKDLAD VVTNACIWLQ
301: ENNVPFNVLI SDSGRRIFVF PQCYAEKQAL GEVSQDLLDT QVNPAVWEIS GHIVLKRRTD FKEASEASAW RLLAEVSLSE ERFEEVKACI FEATGLTESD
401: EEEESSESPY ASSSSVPRAS SHMSEGCLVL Q

Best Arabidopsis Sequence Match ( AT5G55120.1 )
(BLAST)

001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N

Arabidopsis Description

VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.