Factsheet for GSMUA_Achr10P10830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P06380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26850.1	GSMUA_Achr5P06380_001	AT2G02710.1	17982713
AT4G26850.1	GSMUA_Achr5P06380_001	AT2G02710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06609	Canola	cytosol	14.52	80.77
GSMUA_Achr6P12830_001	Banana	cytosol	79.26	79.08
GSMUA_Achr6P07340_001	Banana	cytosol	76.04	77.1
TraesCS4A01G201200.1	Wheat	cytosol	76.04	76.57
TraesCS4D01G102200.1	Wheat	cytosol	75.81	76.33
TraesCS4B01G105300.2	Wheat	cytosol	75.58	76.1
HORVU4Hr1G017030.1	Barley	cytosol	75.12	75.64
TraesCS5A01G107800.2	Wheat	cytosol	71.2	71.86
Os12t0190000-01	Rice	cytosol	72.35	71.69
TraesCS5B01G111700.2	Wheat	cytosol	70.97	71.63
TraesCS5D01G122900.1	Wheat	cytosol	70.74	71.4
HORVU5Hr1G031870.1	Barley	cytosol	70.28	70.6
EES16792	Sorghum	cytosol	70.05	69.89
CDX97369	Canola	cytosol	68.89	69.21
KRH46222	Soybean	cytosol	63.13	68.5
VIT_14s0006g01370.t01	Wine grape	cytosol	67.97	68.13
Bra019082.1-P	Field mustard	cytosol	61.29	67.34
CDY46677	Canola	cytosol	61.75	67.34
CDX92792	Canola	cytosol	61.75	67.17
PGSC0003DMT400069484	Potato	cytosol	67.74	67.12
PGSC0003DMT400078783	Potato	cytosol	67.74	67.12
Bra010424.1-P	Field mustard	cytosol	68.2	67.12
Solyc06g073320.2.1	Tomato	cytosol	67.51	67.05
KRH14364	Soybean	cytosol	67.28	66.97
CDX89298	Canola	cytosol	66.82	66.82
Bra026398.1-P	Field mustard	cytosol	66.82	66.82
KRG98713	Soybean	cytosol	66.82	66.67
CDY14296	Canola	cytosol	67.74	66.67
Solyc02g091510.2.1	Tomato	nucleus	67.05	66.44
CDY29254	Canola	cytosol	66.13	66.28
Zm00001d035337_P001	Maize	cytosol	70.51	65.95
AT5G55120.1	Thale cress	cytosol	65.21	65.66
KRH73776	Soybean	cytosol	66.13	65.38
AT4G26850.1	Thale cress	cytosol	66.36	65.16
GSMUA_Achr6P17590_001	Banana	cytosol	31.34	64.76
VIT_19s0090g01000.t01	Wine grape	cytosol	66.59	63.94
CDY06608	Canola	cytosol	25.12	59.24
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	61.29	46.1
Bra035554.1-P	Field mustard	extracellular	62.67	45.95
GSMUA_Achr6P13510_001	Banana	cytosol, endoplasmic reticulum, plastid	49.54	43.79
GSMUA_Achr4P31690_001	Banana	extracellular, vacuole	25.12	29.46

Protein Annotations

EnsemblPlants:GSMUA_Achr10P10830_001	EnsemblPlants:GSMUA_Achr10T10830_001	EnsemblPlantsGene:GSMUA_Achr10G10830_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	SEG:seg	UniParc:UPI0002954D2D
UniProt:M0RH59	MapMan:10.3.1.5	:	:	:	:

Description

Putative UPF0580 protein C15orf58 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G10830_001]

Coordinates

chr10:-:20510887..20513585

Molecular Weight (calculated)

48431.8 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.226

Length

434 amino acids

Sequence
(BLAST)

001: MLTIKRVPTV LSNYQEDSGE SRGCGRNCLG KCCLPVSKLP LYAFKSDARP EISSSGVDEP PSDFFLNSLL LGGWEDRMSR GLFRYDVTAC ETKVIPGEYG
101: FVAQLNEGRH LKKRPTEFRV DRVLQPFDPA KFNFTKVGQE EVLFRFEAGE GDKARFLESA AVGETNTPSV VAINVSPIEY GHVLLIPRVL DCLPQRIDPD
201: SFLLALHMAA EAGSPYFRLG YNSLGAFATI NHLHFQAYFL TMPFPVEKAP TQRIPVVKGL SQSKVKVSKL LNYPVRGLVY EGGNTLKDLS DVVANSCICL
301: QENNIPFNVL ISDSGRRIFL FPQCYAEKQA LGEVSQEILD TQVNPAVWEI SGHMVLKRKK DYEEASEEYA WRLLAEVSLS EARFEEVKAY IFEATGLESE
401: EEKIEPEENK GTPHQSSTTA VAANHFPEGC LILQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.