Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 17982713 |
| AT4G26850.1 | CDY03044 | AT2G02710.1 | 21798944 |
| AT4G26850.1 | CDY45203 | AT2G02710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010424.1-P | Field mustard | cytosol | 96.15 | 96.15 |
| CDX97369 | Canola | cytosol | 93.88 | 95.83 |
| CDY06609 | Canola | cytosol | 16.33 | 92.31 |
| CDY29254 | Canola | cytosol | 87.98 | 89.61 |
| CDX89298 | Canola | cytosol | 87.98 | 89.4 |
| AT4G26850.1 | Thale cress | cytosol | 86.85 | 86.65 |
| CDX92792 | Canola | cytosol | 74.38 | 82.21 |
| CDY46677 | Canola | cytosol | 73.7 | 81.66 |
| KRH46222 | Soybean | cytosol | 65.99 | 72.75 |
| KRG98713 | Soybean | cytosol | 70.07 | 71.03 |
| Solyc06g073320.2.1 | Tomato | cytosol | 69.84 | 70.48 |
| KRH14364 | Soybean | cytosol | 69.61 | 70.41 |
| PGSC0003DMT400069484 | Potato | cytosol | 69.61 | 70.09 |
| KRH73776 | Soybean | cytosol | 68.71 | 69.02 |
| GSMUA_Achr10P... | Banana | cytosol | 66.67 | 67.74 |
| VIT_19s0090g01000.t01 | Wine grape | cytosol | 68.71 | 67.04 |
| CDY06608 | Canola | cytosol | 27.66 | 66.3 |
| TraesCS4A01G201200.1 | Wheat | cytosol | 63.49 | 64.97 |
| Os12t0190000-01 | Rice | cytosol | 64.4 | 64.84 |
| HORVU4Hr1G017030.1 | Barley | cytosol | 63.27 | 64.73 |
| TraesCS4D01G102200.1 | Wheat | cytosol | 63.27 | 64.73 |
| TraesCS4B01G105300.2 | Wheat | cytosol | 63.04 | 64.5 |
| TraesCS5D01G122900.1 | Wheat | cytosol | 62.81 | 64.42 |
| GSMUA_Achr6P12830_001 | Banana | cytosol | 63.49 | 64.37 |
| TraesCS5B01G111700.2 | Wheat | cytosol | 62.36 | 63.95 |
| TraesCS5A01G107800.2 | Wheat | cytosol | 62.13 | 63.72 |
| EES16792 | Sorghum | cytosol | 62.59 | 63.45 |
| HORVU5Hr1G031870.1 | Barley | cytosol | 62.13 | 63.43 |
| GSMUA_Achr6P07340_001 | Banana | cytosol | 57.37 | 59.11 |
| Zm00001d035337_P001 | Maize | cytosol | 62.13 | 59.05 |
| GSMUA_Achr6P17590_001 | Banana | cytosol | 24.94 | 52.38 |
| CDY20787 | Canola | endoplasmic reticulum, extracellular, vacuole | 67.12 | 51.3 |
Protein Annotations
| EnsemblPlants:CDY14296 | EnsemblPlantsGene:GSBRNA2T00078894001 | GO:A0A078FMF6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0080048 | InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | ProteinID:CDY14296 | ProteinID:CDY14296.1 |
| SEG:seg | UniParc:UPI0004EEEB74 | UniProt:A0A078FMF6 | MapMan:10.3.1.5 | : | : |
Description
BnaA08g14270DBnaA08g14270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMF6]
Coordinates
chrLK032041:+:738612..740896
Molecular Weight (calculated)
48917.5 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.162
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKIKRVPTV VSNYQKDEAS DESVGCGRNC LGACCLNGAR LPLYSCKKLE NSGTGEKLVI SHEAREPPVA FLESLVLGEW EDRFQRGLFR YDVTACETKV
101: IPGKYGFVAQ LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDCDV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP
201: QRIDHKSLLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKAPSKKM ITTVSGVKIS ELVNYPVRSL LFEGGTSMQD LSDTVSDACV
301: CLQENNIPFN ILISDSGRQI FLMPQCYAEK QALGEVSPEL LETQVNPAVW EISGHMVLKR KEDYEGASEE NAWRLLAEAS LSEERFKEVN ALIFDAIGCS
401: NQEEELEGIL VQPSGSVNQT GNRTLGGPIT NGTASECLVL Q
101: IPGKYGFVAQ LNEGRHLKKR PTEFRVDKVL QSFDGNKFNF TKVGQEELLF QFEAGEDCDV QFFPCMPLDA ENSPSVVAIN VSPIEYGHVL LIPRVLDCLP
201: QRIDHKSLLL ALHMAAEAAN PYFRLGYNSL GAFATINHLH FQAYYLAMPF PLEKAPSKKM ITTVSGVKIS ELVNYPVRSL LFEGGTSMQD LSDTVSDACV
301: CLQENNIPFN ILISDSGRQI FLMPQCYAEK QALGEVSPEL LETQVNPAVW EISGHMVLKR KEDYEGASEE NAWRLLAEAS LSEERFKEVN ALIFDAIGCS
401: NQEEELEGIL VQPSGSVNQT GNRTLGGPIT NGTASECLVL Q
001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ
Arabidopsis Description
VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.