CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G55120.1	Thale cress	cytosol	78.8	33.64
CDX97369	Canola	cytosol	67.39	28.7
CDX92792	Canola	cytosol	61.41	28.32
CDX89298	Canola	cytosol	65.76	27.88
CDY29254	Canola	cytosol	65.22	27.71
CDY14296	Canola	cytosol	66.3	27.66
CDY46677	Canola	cytosol	58.7	27.14
KRH14364	Soybean	cytosol	60.33	25.46
KRH46222	Soybean	cytosol	54.89	25.25
Solyc06g073320.2.1	Tomato	cytosol	59.78	25.17
GSMUA_Achr10P...	Banana	cytosol	59.24	25.12
GSMUA_Achr6P12830_001	Banana	cytosol	59.24	25.06
PGSC0003DMT400069484	Potato	cytosol	59.24	24.89
EES16792	Sorghum	cytosol	58.7	24.83
CDY20787	Canola	endoplasmic reticulum, extracellular, vacuole	77.72	24.78
TraesCS4A01G201200.1	Wheat	cytosol	57.61	24.59
KRG98713	Soybean	cytosol	57.61	24.37
TraesCS4D01G102200.1	Wheat	cytosol	57.07	24.36
HORVU4Hr1G017030.1	Barley	cytosol	57.07	24.36
TraesCS4B01G105300.2	Wheat	cytosol	57.07	24.36
Os12t0190000-01	Rice	cytosol	57.61	24.2
KRH73776	Soybean	cytosol	57.61	24.15
TraesCS5A01G107800.2	Wheat	cytosol	55.98	23.95
VIT_19s0090g01000.t01	Wine grape	cytosol	58.7	23.89
HORVU5Hr1G031870.1	Barley	cytosol	55.98	23.84
GSMUA_Achr6P07340_001	Banana	cytosol	55.43	23.83
TraesCS5D01G122900.1	Wheat	cytosol	55.43	23.72
Zm00001d035337_P001	Maize	cytosol	58.7	23.28
TraesCS5B01G111700.2	Wheat	cytosol	53.8	23.02
GSMUA_Achr6P17590_001	Banana	cytosol	9.24	8.1
CDY06609	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06608	EnsemblPlantsGene:GSBRNA2T00122750001	GO:A0A078F4K8	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	ProteinID:CDY06608	ProteinID:CDY06608.1
SEG:seg	UniParc:UPI0004EEF9F2	MapMan:10.3.1.5	:	:	:

Description

BnaC02g13320D

Coordinates

chrLK031971:-:683269..684078

Molecular Weight (calculated)

20269.1 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.176

Length

184 amino acids

Sequence
(BLAST)

001: MPFPIEKAHS LKISTTNDGV RISKLMSYPV RGLFFEGGNS IKDLSDAVSN ASVCLQNNNI PFNILISDSG KRIFLLLQCY AEKQALGEVS SELLGTQVNP
101: AVWEMSGHMV LKRKEDYEGA SEEKARSLLA EVSLSEERFK EVNTMIFEAI GCSGEEEEEL EEESSISGGF IRVNCCTSVK GDVF

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.