Factsheet for VIT_14s0006g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	68.13	67.97
GSMUA_Achr6P12830_001	Banana	cytosol	67.44	67.13
PGSC0003DMT400078783	Potato	cytosol	66.05	65.3
Os12t0190000-01	Rice	cytosol	66.05	65.3
TraesCS5D01G122900.1	Wheat	cytosol	64.43	64.88
TraesCS5B01G111700.2	Wheat	cytosol	64.2	64.65
TraesCS5A01G107800.2	Wheat	cytosol	64.2	64.65
Solyc02g091510.2.1	Tomato	nucleus	65.36	64.61
TraesCS4A01G201200.1	Wheat	cytosol	64.2	64.5
TraesCS4D01G102200.1	Wheat	cytosol	64.2	64.5
TraesCS4B01G105300.2	Wheat	cytosol	63.97	64.27
HORVU4Hr1G017030.1	Barley	cytosol	63.51	63.81
EES16792	Sorghum	cytosol	63.97	63.68
HORVU5Hr1G031870.1	Barley	cytosol	63.51	63.66
VIT_19s0090g01000.t01	Wine grape	cytosol	63.74	61.06
GSMUA_Achr6P07340_001	Banana	cytosol	60.28	60.98
Zm00001d035337_P001	Maize	cytosol	63.51	59.27
GSMUA_Achr6P17590_001	Banana	cytosol	24.94	51.43
VIT_10s0003g05000.t01	Wine grape	cytosol	29.1	33.6

Protein Annotations

MapMan:10.3.1.5	EntrezGene:100262099	wikigene:100262099	ProteinID:CBI33528	ProteinID:CBI33528.3	UniProt:D7TSQ6
EMBL:FN596245	InterPro:GDPGP	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0080048	EntrezGene:LOC100262099	wikigene:LOC100262099	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11
UniParc:UPI00015C9806	ArrayExpress:VIT_14s0006g01370	EnsemblPlantsGene:VIT_14s0006g01370	EnsemblPlants:VIT_14s0006g01370.t01	RefSeq:XP_003633703	RefSeq:XP_003633703.1
RefSeq:XP_003633703.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:17263917..17267254

Molecular Weight (calculated)

49115.4 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.320

Length

433 amino acids

Sequence
(BLAST)

001: MLTIKRVPTV VSNYQEEASE SLGCGRNCLG HCCLPVSKLP LYTFKKNVKD SSEARVEVSS EGQPPAAFLD NLLLGQWEDR MSQGLFRYDV TLCETRIMPG
101: NYGFIAQLNE GRHMKKRPTE FRVDQVLQPF DENKFNFTKI GQEEVLFRFE QSNDNNAHYF PVSPVTADSN SSSVVAINVS PIEYGHVLLI PHVLDCLPQR
201: IDHDSFLLAL HMAKEAADPF FRLGYNSLGA FATINHLHFQ AYYLMAPFPV EKAPTERIIR RGKLPNSGVM ISKMLNYPVQ GFVFEGGNLM QDLSDTVANS
301: CIFLQNNNIP YNVLISDCGG RIFLFPQCFA EKQALGEVSQ ELLDTLVNPA VWEISGHMVL KRREDYENAS EEYAWRLLAE VSLSEERFQE VKGYVLEASG
401: LQEADMEEIR ENERDREEDF NKPPTPRATP TFA

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.