Factsheet for Solyc02g091510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28012364

gfp PMID: 28012364 doi

DY Yang, NN Ma, KY Zhuang, SB Zhu, ZM Liu, XH Yang

College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong 271018, PR China., College of Life Science, State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, Shandong 271018, PR China. Electronic address: xhyang@sdau.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078783	Potato	cytosol	95.21	95.21
GSMUA_Achr10P...	Banana	cytosol	66.44	67.05
VIT_14s0006g01370.t01	Wine grape	cytosol	64.61	65.36
GSMUA_Achr6P12830_001	Banana	cytosol	64.61	65.06
TraesCS5A01G107800.2	Wheat	cytosol	62.33	63.49
TraesCS4A01G201200.1	Wheat	cytosol	62.33	63.34
TraesCS4D01G102200.1	Wheat	cytosol	62.33	63.34
TraesCS5D01G122900.1	Wheat	cytosol	62.1	63.26
TraesCS5B01G111700.2	Wheat	cytosol	62.1	63.26
HORVU4Hr1G017030.1	Barley	cytosol	62.1	63.11
TraesCS4B01G105300.2	Wheat	cytosol	62.1	63.11
Os12t0190000-01	Rice	cytosol	62.56	62.56
HORVU5Hr1G031870.1	Barley	cytosol	61.64	62.5
EES16792	Sorghum	cytosol	61.19	61.61
Solyc06g073320.2.1	Tomato	cytosol	59.82	59.95
GSMUA_Achr6P07340_001	Banana	cytosol	58.45	59.81
Zm00001d035337_P001	Maize	cytosol	61.19	57.76
GSMUA_Achr6P17590_001	Banana	cytosol	23.74	49.52

Protein Annotations

EnsemblPlants:Solyc02g091510.2.1	EnsemblPlantsGene:Solyc02g091510.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0080048	InterPro:GDPGP	PANTHER:PTHR20884	PANTHER:PTHR20884:SF11	UniParc:UPI00027679A1
UniProt:K4BCU9	MapMan:10.3.1.5	:	:	:	:

Description

No Description!

Coordinates

chr2:-:52783440..52788468

Molecular Weight (calculated)

49064.8 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.161

Length

438 amino acids

Sequence
(BLAST)

001: MLTVKRVPTL VSNYQEDVLE GNVMGCGRKC LGKCCMPVSV LPLYAFKNDD NEPIENDVQT LPEEECQMSF LNDLLLGLWE ERMSQGLFRY DVTTCETKVI
101: PGRCGFIAQL NEGRHLKKRP TEFCIDKVLQ PFDENKFNFT KVGQEEVLFR FEPSTDYKAH YFSGMRVNSG ISPSIVAINV SPIEYGHVLL IPRVLDCLPQ
201: RIDRDSFAIA LHFAREVADP FFRVGYNSLG AFATINHLHF QAYYLSVPFP VEKAPIQKIL ARKGLGGAGV IVSKLLNYPV RGFAFEGGNG STARDLSDAV
301: VNSCISLQNK NIPFNILIAQ CGKKIFLLPQ CYAEKQALGV VDQELLDTQV NPAVWEISGH IVLKRTKDYN DASEEYAWKL LSEVSISEER FEEVKGYISE
401: AADLQADEDE NINPEKEIPD SPGPQVASHI PPDCLVLQ

Best Arabidopsis Sequence Match ( AT4G26850.1 )
(BLAST)

001: MLKIKRVPTV VSNYQKDDGA EDPVGCGRNC LGACCLNGAR LPLYACKNLV KSGEKLVISH EAIEPPVAFL ESLVLGEWED RFQRGLFRYD VTACETKVIP
101: GKYGFVAQLN EGRHLKKRPT EFRVDKVLQS FDGSKFNFTK VGQEELLFQF EAGEDAQVQF FPCMPIDPEN SPSVVAINVS PIEYGHVLLI PRVLDCLPQR
201: IDHKSLLLAV HMAAEAANPY FRLGYNSLGA FATINHLHFQ AYYLAMPFPL EKAPTKKITT TVSGVKISEL LSYPVRSLLF EGGSSMQELS DTVSDCCVCL
301: QNNNIPFNIL ISDCGRQIFL MPQCYAEKQA LGEVSPEVLE TQVNPAVWEI SGHMVLKRKE DYEGASEDNA WRLLAEASLS EERFKEVTAL AFEAIGCSNQ
401: EEDLEGTIVH QQNSSGNVNQ KSNRTHGGPI TNGTAAECLV LQ

Arabidopsis Description

VTC2GDP-L-galactose phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.