Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G388200.1 | Wheat | cytosol | 62.59 | 26.82 |
| HORVU6Hr1G083130.2 | Barley | extracellular | 43.54 | 26.78 |
| TraesCS3A01G394400.1 | Wheat | plastid | 66.67 | 24.69 |
| TraesCS3B01G426400.3 | Wheat | plastid | 65.31 | 24.18 |
| HORVU5Hr1G100430.1 | Barley | mitochondrion | 42.86 | 23.86 |
| HORVU3Hr1G089030.13 | Barley | plastid | 66.67 | 23.67 |
| KXG33927 | Sorghum | plastid | 62.59 | 23.65 |
| Zm00001d042478_P003 | Maize | plastid | 62.59 | 23.59 |
| HORVU5Hr1G075160.1 | Barley | plastid | 46.94 | 22.19 |
| Os12t0190000-01 | Rice | cytosol | 40.14 | 13.47 |
| GSMUA_Achr6P13510_001 | Banana | cytosol, endoplasmic reticulum, plastid | 43.54 | 13.03 |
| Os12t0612100-01 | Rice | cytosol | 16.33 | 6.52 |
| HORVU6Hr1G054830.1 | Barley | cytosol | 1.36 | 1.9 |
Protein Annotations
| EnsemblPlants:Os01t0901300-01 | EnsemblPlantsGene:Os01g0901300 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0080048 |
| InterPro:GDPGP | PANTHER:PTHR20884 | PANTHER:PTHR20884:SF11 | ProteinID:BAS75751.1 | UniParc:UPI000393B6E6 | UniProt:A0A0P0VBP6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Similar to VTC2-like protein. (Os01t0901300-01)
Coordinates
chr1:+:39244622..39247128
Molecular Weight (calculated)
16760.9 Da
IEP (calculated)
7.508
GRAVY (calculated)
-0.511
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRSFDLSC SLRKEEENGT NLSPFVRKLF KEWDDRKARG LFHHDISSCE TKVLPGEHNF VATLIEGRDQ KKRPTQFGMN QVLQPFDSVK FNFTKVSPEE
101: VIFTFKESQN DSVKYFDNVP HAVAASPTAI LINVSECYTP LTVMPKS
101: VIFTFKESQN DSVKYFDNVP HAVAASPTAI LINVSECYTP LTVMPKS
001: MLLKIKRVPT VVSNYQKDET VEEGGCGRNC LSKCCINGAR LPLYTCKNLD KSVGENTESP VTFLESLVIG EWEDRFQRGL FRYDVTACET KVIPGKYGFI
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
101: AQLNEGRHLK KRPTEFRVDK VLQPFDGNKF NFTKVGQEEL LFQFKASTND DDSEIQFLAS MPLDADNSPS VVAINVSPIE YGHVLLIPRV LDCLPQRIDH
201: KSLLLALQMA AEADNPYFRL GYNSLGAFAT INHLHFQAYY LAMQFPIEKA SSLKITTTNN GVKISKLLNY PVRGLLVEGG NTIKDLADTV SDASVCLQNN
301: NIPFNILISD SGKRIFLLPQ CYAEKQALGE VSSTLLDTQV NPAVWEMSGH MVLKRKEDYE GASEEKAWRL LAEVSLSEER FREVNTMIFD AIGFSSHEEE
401: EEEELEEQNS MNGGSFTIVH CPSVKEEAVS N
Arabidopsis Description
VTC5VTC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIM1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.