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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d004055_P001 Maize golgi, nucleus, plasma membrane 93.33 90.87
TraesCS2A01G278500.1 Wheat plasma membrane 81.46 82.84
TraesCS2D01G277600.1 Wheat plasma membrane 81.88 81.54
TraesCS2B01G296100.1 Wheat plasma membrane 81.04 79.88
TraesCS7B01G477900.1 Wheat plasma membrane 63.54 79.43
Os04t0373400-01 Rice plasma membrane 79.79 79.3
TraesCS5D01G378200.1 Wheat plasma membrane 79.17 78.84
TraesCS2A01G278400.1 Wheat plasma membrane 78.33 78.33
TraesCS2B01G296000.1 Wheat plasma membrane 78.33 78.33
TraesCS2D01G277400.1 Wheat plasma membrane 78.12 78.12
TraesCS5D01G378300.1 Wheat plasma membrane 77.92 77.59
TraesCS5B01G370800.1 Wheat plasma membrane 43.12 77.53
TraesCS7D01G541200.1 Wheat plasma membrane 75.83 77.45
TraesCS5A01G368700.1 Wheat plasma membrane 77.71 77.39
TraesCS7A01G554500.1 Wheat plasma membrane 75.42 77.02
HORVU2Hr1G068140.14 Barley endoplasmic reticulum, golgi, mitochondrion, peroxisome 81.25 76.62
HORVU7Hr1G121100.1 Barley plasma membrane 74.79 76.38
TraesCS7B01G479000.1 Wheat plasma membrane 74.79 76.38
TraesCS7B01G478700.1 Wheat plasma membrane 74.58 76.17
TraesCS5A01G368500.1 Wheat plasma membrane 76.46 76.14
TraesCS5B01G371100.1 Wheat plasma membrane 77.71 76.12
TraesCS5D01G378100.1 Wheat plasma membrane 78.12 75.76
TraesCS7D01G541800.1 Wheat plasma membrane 73.75 75.32
TraesCS5A01G368600.2 Wheat plasma membrane 77.5 75.0
TraesCS5B01G371200.2 Wheat plasma membrane 78.75 73.26
TraesCS5A01G368800.1 Wheat mitochondrion 70.83 72.65
EES06698 Sorghum plasma membrane 69.38 69.38
EES06697 Sorghum plasma membrane 68.33 67.35
KXG19962 Sorghum plasma membrane 66.67 66.81
GSMUA_Achr11P... Banana plasma membrane 67.08 65.98
HORVU2Hr1G068090.13 Barley plastid 77.5 65.96
KXG21780 Sorghum plasma membrane 60.0 64.0
OQU80064 Sorghum plasma membrane 38.12 61.62
OQU77813 Sorghum plasma membrane 60.62 61.39
KXG30060 Sorghum plasma membrane 63.54 59.69
HORVU5Hr1G091820.13 Barley peroxisome 60.83 59.23
VIT_17s0000g09270.t01 Wine grape plasma membrane 53.54 57.37
PGSC0003DMT400046664 Potato plasma membrane 55.21 55.91
EER90350 Sorghum plasma membrane 53.75 53.42
Solyc03g112250.1.1 Tomato nucleus, peroxisome, plasma membrane 54.38 53.37
PGSC0003DMT400046666 Potato plasma membrane 52.92 51.94
PGSC0003DMT400046656 Potato plasma membrane 48.33 49.79
Solyc03g112260.2.1 Tomato plasma membrane 50.62 46.82
OQU77045 Sorghum plastid 39.17 45.74
EES03448 Sorghum plasma membrane 46.46 45.6
EER95390 Sorghum plasma membrane 47.92 45.54
OQU78400 Sorghum cytosol, plasma membrane, vacuole 46.88 45.0
OQU88303 Sorghum cytosol, peroxisome, plasma membrane 37.92 35.97
EER99421 Sorghum plasma membrane 38.54 31.25
Protein Annotations
MapMan:24.2.4.1.1UniProt:A0A1B6PK24GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlants:KXG26020ProteinID:KXG26020ProteinID:KXG26020.1InterPro:MATE_famPFAM:PF01554
PANTHER:PTHR11206PANTHER:PTHR11206:SF118EnsemblPlantsGene:SORBI_3006G042200TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI00081AC30A
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:+:28152845..28164202
Molecular Weight (calculated)
51953.1 Da
IEP (calculated)
8.516
GRAVY (calculated)
0.786
Length
480 amino acids
Sequence
(BLAST)
001: MMPSMDEPLL GNGVLKTNGV RESLVVAEVR KQLYLAGPLI AAWILQNIVQ MISVMFVGHL GELALSSASI ATSFAGVTGF SLLSGMASSL DTLCGQSFGA
101: KQYYLLGIYK QRAILVLTLV SLVVAIIWSY TGQILLLFGQ DPEIAAGAGS YIRWMIPALF VYGPLQCHVR FLQTQNIVLP VMLSSGATAL NHLLVCWLLV
201: YKIGMGNKGA ALANAISYLT NVSILAIYVR LAPACRNTWR GFSKEAFHDI PSFLRLGVPS ALMVCLEWWS FELLVLLSGL LPNPKLETSV LSISLNTGSL
301: AFMIPFGLSA AISTRVSNEL GAGRPHAAHL STRVVMVLAI VVGILIGLAM ILVRNLWGYA YSNEEEVVKY ISKMMPILAV SFLFDCVQCV LSGVARGCGW
401: QKIGACVNLG AYYLIGIPAA FCFAFLYHLG GMGLWLGIIC ALAIQMLLLL TITLCSNWEK EALKAKDRVY SSSLPVDMMT
Best Arabidopsis Sequence Match ( AT5G52450.1 )
(BLAST)
001: MRDDRERGEG DLSWPLIGEK SSVKEEVKKQ LWLSGPLIAV SLLQFCLQVI SVMFVGHLGS LPLSAASIAT SFASVTGFSF LMGTASALDT LCGQAYGAKK
101: YGMLGIQMQR AMFVLTLASI PLSIIWANTE HLLVFFGQNK SIATLAGSYA KFMIPSIFAY GLLQCFNRFL QAQNNVFPVV FCSGVTTSLH VLLCWVLVFK
201: SGLGFQGAAL ANSISYWLNV VLLFCYVKFS PSCSLTWTGF SKEALRDILP FLRLAVPSAL MVCLEMWSFE LLVLLSGLLP NPVLETSVLS ICLNTSGTMW
301: MIPFGLSGAA STRISNELGA GNPKVAKLAV RVVICIAVAE SIVIGSVLIL IRNIWGLAYS SELEVVSYVA SMMPILALGN FLDSLQCVLS GVARGCGWQK
401: IGAIINLGSY YLVGVPSGLL LAFHFHVGGR GLWLGIICAL VVQVFGLGLV TIFTNWDEEA KKATNRIESS SSVKDFAVDD RSVVVF
Arabidopsis Description
DTX16Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178UMN3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.