Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21028 | Sorghum | plastid | 31.32 | 36.23 |
| OQU79618 | Sorghum | cytosol | 31.94 | 35.42 |
| KXG24308 | Sorghum | cytosol | 27.14 | 28.95 |
| KXG24291 | Sorghum | cytosol, nucleus, peroxisome | 30.27 | 28.43 |
| EES08977 | Sorghum | cytosol | 29.23 | 28.11 |
| OQU84013 | Sorghum | cytosol | 29.85 | 26.98 |
| OQU84018 | Sorghum | plasma membrane | 28.18 | 25.0 |
| OQU84015 | Sorghum | cytosol | 13.78 | 20.5 |
Protein Annotations
| EnsemblPlants:OQU79990 | EnsemblPlantsGene:SORBI_3007G063500 | EntrezGene:8084997 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF247_pln | PANTHER:PTHR31549 | PANTHER:PTHR31549:SF27 | PFAM:PF03140 | ProteinID:OQU79990 | ProteinID:OQU79990.1 |
| RefSeq:XP_002445159.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A87D4C | UniProt:A0A1Z5R8C5 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr7:-:6669991..6671594
Molecular Weight (calculated)
53246.9 Da
IEP (calculated)
8.707
GRAVY (calculated)
0.033
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVSGAITP ASCRRCLSPT AVVVHDAIQE DTVQQDGAPT MDGMAVRIQF LNKSILRFPS NLRRIAADKD YIAPRTVALG PYYHGLRKLQ AMEEVKRTAV
101: GFFFQGLAAA AAGAAAESRE SAYQKMVPIA RQVRGWYADA AGIATHDDDA FTTMMFVDGC FLVQFIGTML RKGVEETAAA SPLRSMIQPH LLGIMRDMML
201: LENQIPWPVM EFFMRLQGLQ TKHIIALLVS WGLEGRVWRD SQEPLSLVDI DERYTPSHLL CLIRFYKVGS ACGSGGGGGR RRRRRNGEEG ISGKAVPIST
301: SAAELAEMGI KLRAREKTTK LSDMNLIKGP LFATLSLPPL YVDSLAANWL VNMAAFEMCT EASSTDEYAV NSYLSVLSLL MNQENDVREL RVKHIVHGFF
401: GDEETLEFFK SLTPILYLDG QAYLRIIVDL EAYRQKRRAW IAVYSFLYNN AKTIATVLSI VGVLVGIFKA LYSLKKQQM
101: GFFFQGLAAA AAGAAAESRE SAYQKMVPIA RQVRGWYADA AGIATHDDDA FTTMMFVDGC FLVQFIGTML RKGVEETAAA SPLRSMIQPH LLGIMRDMML
201: LENQIPWPVM EFFMRLQGLQ TKHIIALLVS WGLEGRVWRD SQEPLSLVDI DERYTPSHLL CLIRFYKVGS ACGSGGGGGR RRRRRNGEEG ISGKAVPIST
301: SAAELAEMGI KLRAREKTTK LSDMNLIKGP LFATLSLPPL YVDSLAANWL VNMAAFEMCT EASSTDEYAV NSYLSVLSLL MNQENDVREL RVKHIVHGFF
401: GDEETLEFFK SLTPILYLDG QAYLRIIVDL EAYRQKRRAW IAVYSFLYNN AKTIATVLSI VGVLVGIFKA LYSLKKQQM
001: MDPQIVVDIK SLISEDNGLK LLRESAGSEL CCIVRIPQSL ARINLKAYEP KIVSIGPYHH GKEHLKMTQQ HKRRFLKFFV AKMEEKGFVP QELVKAVSSL
101: EGVIRGSYSE DLGLDSENLV QMMVLDGCFI LTLFFVVSGK VEYTNLDDPI FRMPWILPSI RADLLLLENQ VPYVLLQTLF ETSKLVTCSG LNEIAFEFFN
201: YSLQKPETFW EKHYGLEAKH LLDLIRKTFV PVPSQRRIKD HSSKSSFNDH EYLGFVLSAK KLHLRGIKFK PRKNTDSILD ISYSNGVLHI PPVVMDDFTA
301: SIFLNCVAFE QLYADSSNHI TSYVAFMACL INEESDASFL SERRILENYF GTEDEVSRFY KRIGKDIALD LEKSYLAKVF EGVNEYTSQG FHVHCAEFIH
401: THFDSPWTFA SSFAALLLLL FAALQVFFAA YSYFRPPKEK
101: EGVIRGSYSE DLGLDSENLV QMMVLDGCFI LTLFFVVSGK VEYTNLDDPI FRMPWILPSI RADLLLLENQ VPYVLLQTLF ETSKLVTCSG LNEIAFEFFN
201: YSLQKPETFW EKHYGLEAKH LLDLIRKTFV PVPSQRRIKD HSSKSSFNDH EYLGFVLSAK KLHLRGIKFK PRKNTDSILD ISYSNGVLHI PPVVMDDFTA
301: SIFLNCVAFE QLYADSSNHI TSYVAFMACL INEESDASFL SERRILENYF GTEDEVSRFY KRIGKDIALD LEKSYLAKVF EGVNEYTSQG FHVHCAEFIH
401: THFDSPWTFA SSFAALLLLL FAALQVFFAA YSYFRPPKEK
Arabidopsis Description
At5g22540 [Source:UniProtKB/TrEMBL;Acc:Q9FK85]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.