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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 18203134
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G080300.1 Barley nucleus 73.44 76.42
TraesCS4B01G316800.1 Wheat nucleus 72.66 76.23
TraesCS4A01G416000.1 Wheat nucleus 72.66 75.61
TraesCS4D01G313400.1 Wheat nucleus 71.88 75.41
Zm00001d027686_P001 Maize nucleus 71.09 70.0
KXG40163 Sorghum nucleus 68.75 66.17
Os03t0150200-00 Rice nucleus 69.53 63.12
KRG95653 Soybean nucleus 53.12 54.84
GSMUA_Achr1P15350_001 Banana nucleus 50.78 54.62
Zm00001d027687_P001 Maize plastid 28.91 50.0
Os09t0571700-00 Rice nucleus 50.78 49.62
KRH19547 Soybean nucleus 51.56 47.83
CDY50478 Canola nucleus 48.44 46.97
KRH32175 Soybean nucleus 50.0 46.72
CDX77538 Canola nucleus 44.53 45.6
CDY32941 Canola nucleus 46.88 45.45
Bra027493.1-P Field mustard nucleus 46.88 45.45
AT1G04370.1 Thale cress nucleus 46.88 45.11
CDY18225 Canola nucleus 46.88 45.11
AT5G43410.1 Thale cress nucleus 46.09 45.04
CDY53187 Canola nucleus 46.88 44.44
CDY10057 Canola nucleus 46.88 44.44
CDY60663 Canola nucleus 46.09 44.03
Bra015310.1-P Field mustard nucleus 46.09 44.03
Bra032512.1-P Field mustard nucleus 46.88 43.48
AT3G23220.1 Thale cress nucleus 46.88 43.17
CDX85070 Canola nucleus 46.09 42.75
Bra014924.1-P Field mustard nucleus 46.09 42.75
CDY35515 Canola nucleus 42.19 33.75
Bra023749.1-P Field mustard nucleus 26.56 28.33
Os02t0654700-01 Rice nucleus 41.41 17.49
Os04t0547600-01 Rice nucleus 43.75 17.07
Os04t0546800-01 Rice nucleus 39.06 15.72
Os02t0655200-02 Rice nucleus 42.19 15.7
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10EntrezGene:4335322EMBL:AK107745InterPro:AP2/ERF-transcript_factorInterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sfProteinID:BAF14241.1ProteinID:BAS88286.1ProteinID:CAE75882.1InterPro:DNA-bd_dom_sfGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955EnsemblPlantsGene:Os04g0257500
EnsemblPlants:Os04t0257500-01PFAM:PF00847PIRSF:PIRSF038123PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31190
PANTHER:PTHR31190:SF42UniProt:Q6MWK9SMART:SM00380SUPFAM:SSF54171UniParc:UPI00002255BDRefSeq:XP_015635372.1
SEG:seg:::::
Description
ETHYLENE RESPONSE FACTOR 128Similar to Transcription factor TSRF1. (Os04t0257500-01)
Coordinates
chr4:-:10316737..10317614
Molecular Weight (calculated)
14194.3 Da
IEP (calculated)
5.957
GRAVY (calculated)
-0.800
Length
128 amino acids
Sequence
(BLAST)
001: MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK GAMAVLNFPG RTSSTGSSSS SSSTPPAPVT TSRHCADTTE
101: KVELVYLDDK VLDELLAEDY SYRNNNNY
Best Arabidopsis Sequence Match ( AT3G23230.1 )
(BLAST)
001: MESSNRSSNN QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY DRAAFNLRGH LAILNFPNEY YPRMDDYSLR PPYASSSSSS
101: SSGSTSTNVS RQNQREVFEF EYLDDKVLEE LLDSEERKR
Arabidopsis Description
ERF098Ethylene-responsive transcription factor ERF098 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.