Factsheet for Os04t0657100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27307	Sorghum	cytosol	73.72	71.36
GSMUA_Achr3P28530_001	Banana	cytosol	48.21	54.47
Os01t0695300-01	Rice	cytosol	41.84	53.42
GSMUA_Achr9P22220_001	Banana	cytosol	48.47	53.22
Os05t0543400-01	Rice	cytosol	47.45	52.39
Os01t0703400-01	Rice	cytosol, mitochondrion	44.39	49.29
Os04t0657300-00	Rice	cytosol, nucleus	1.02	20.0

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:4337260	MapMan:9.1.3.2	EMBL:AK072747	ProteinID:BAF16035.1	ProteinID:BAS91413.1
ProteinID:EEE61825.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlantsGene:Os04g0657100	EnsemblPlants:Os04t0657100-01	PFAM:PF00348	ScanProsite:PS00444	PANTHER:PTHR11525
PANTHER:PTHR11525:SF2	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	UniProt:Q0J9F2	SUPFAM:SSF48576	UniParc:UPI00001B1DCA
RefSeq:XP_015635080.1	SEG:seg	:	:	:	:

Description

farnesyl diphosphate synthase 3Similar to Farnesyl diphosphate synthase (Fragment). (Os04t0657100-01)

Coordinates

chr4:-:33517229..33520052

Molecular Weight (calculated)

45322.2 Da

IEP (calculated)

5.672

GRAVY (calculated)

-0.365

Length

392 amino acids

Sequence
(BLAST)

001: MSMQEMLRIG DDDGRSDALE RELKEKLRLR GDASPAKCTR QEQRWRSDHG IVDARERFVQ AYGRLRDDLV GDDSCELTDE ARRWLAQMID YNVPGGKLNR
101: GLSVIDSYLL LKQGSEVTED DFFLACVLGW CVEWFQACAL LLDDIMDDSH TRRDQICWYR RPEVGLRGIN DGIILKCHIL IMIKKYFREK PYFLDILEIW
201: SEIALQTSLG QMLDLISTHT GADDLAKYSI EGYRRIVKYK TAYYSFYLPV ANALLLSGAK LEDFSGLKDI LIEMGIYFQI QDDYLDCFAD PNTIGKIGTD
301: IEDHKCSWLI VQALGHADNN QIEVLHRNYG KKDSSSVSEV KRTYAALDLK DIFSEFERRC YNHLVTSIEA QKDHAAREIL ISFLKKIHQR KK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.