CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0657100-01	Rice	cytosol	71.36	73.72
GSMUA_Achr3P28530_001	Banana	cytosol	47.16	55.04
KRH36635	Soybean	cytosol, nucleus	46.17	54.68
CDX77796	Canola	cytosol	46.17	54.52
CDY17706	Canola	cytosol	46.17	54.52
Bra022156.1-P	Field mustard	cytosol	45.93	54.39
PGSC0003DMT400022420	Potato	cytosol	45.93	54.39
CDY28904	Canola	cytosol	45.93	54.39
KRH11625	Soybean	cytosol, nucleus	45.93	54.39
GSMUA_Achr9P22220_001	Banana	cytosol	47.9	54.34
AT4G17190.1	Thale cress	cytosol	45.19	53.51
VIT_19s0015g01010.t01	Wine grape	cytosol	44.69	53.08
PGSC0003DMT400076602	Potato	cytosol	44.44	52.63
KRH30637	Soybean	cytosol	11.36	52.27
Solyc12g015860.1.1	Tomato	cytosol, plastid	43.95	52.05
EES19888	Sorghum	cytosol	45.19	51.84
PGSC0003DMT400037236	Potato	cytosol	38.77	51.31
EES01337	Sorghum	cytosol	44.94	51.12
Solyc10g005820.1.1	Tomato	cytosol	14.81	50.42
Bra024917.1-P	Field mustard	mitochondrion	45.68	49.73
AT5G47770.1	Thale cress	cytosol, mitochondrion	46.91	49.48
CDY68039	Canola	cytosol, mitochondrion, plastid	46.91	49.22
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	29.63	48.39
KRH63452	Soybean	cytosol	13.83	45.9
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	29.63	44.61
KRG89761	Soybean	cytosol	22.47	40.62

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	UniProt:A0A1B6PNS2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:KXG27307	ProteinID:KXG27307	ProteinID:KXG27307.1	PFAM:PF00348
PANTHER:PTHR11525	PANTHER:PTHR11525:SF2	InterPro:Polyprenyl_synt	EnsemblPlantsGene:SORBI_3006G248000	SUPFAM:SSF48576	UniParc:UPI00081ADC78
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:58752278..58756227

Molecular Weight (calculated)

46255.0 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.349

Length

405 amino acids

Sequence
(BLAST)

001: MSSLLHAVSS SSGGAPAALE AEVEEKLVLY DDDDNAPPPA APPQIKRGER RLQPRREGSA ADVVGDHRER FLRAYDRLRD ELLDDDSCEL TDEATRWVAQ
101: MIDYNVPGGK LNRGLSVIDS YLLLKQGSEV AEDEFFLACV LGWCVEWFQA CALLLDDIMD DSHTRRDQIC WYRRPEVGLH GINDGILLKC HIARLIKKYF
201: REKPYYIDIC ELWNEIALQT SLGQMLDLIS THNVANDVAK YNIEGYRRIV KYKTSYYSFY LPVACALLLC GTKLENISGL RDVLIEMGIY FQAQDDYLDC
301: FADPNTIGKI GTDIEDHKCS WLIVQALSHA NSNEIEVLLK NYGKKDSTSV SKVKNTYSTL DLKDIFSEFE DRAYKHLVTS IEDQHDHAVQ EILKSFLKKI
401: HRRKK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.