Factsheet for Solyc10g005820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0657300-00	Rice	cytosol, nucleus	9.24	55.0
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	80.67	38.71
PGSC0003DMT400022420	Potato	cytosol	96.64	33.63
Solyc12g015860.1.1	Tomato	cytosol, plastid	84.03	29.24
VIT_19s0015g01010.t01	Wine grape	cytosol	79.83	27.86
GSMUA_Achr3P28530_001	Banana	cytosol	73.11	25.07
Zm00001d043727_P001	Maize	cytosol	73.95	24.79
EES01337	Sorghum	cytosol	73.95	24.72
TraesCS3D01G258500.1	Wheat	cytosol	73.11	24.72
Zm00001d011673_P001	Maize	cytosol	73.11	24.51
GSMUA_Achr9P22220_001	Banana	cytosol	73.11	24.37
TraesCS1B01G383400.1	Wheat	golgi	71.43	24.29
EES19888	Sorghum	cytosol	71.43	24.08
TraesCS3A01G258600.1	Wheat	cytosol	71.43	24.08
TraesCS1A01G365800.1	Wheat	cytosol	70.59	24.0
TraesCS3A01G254300.1	Wheat	cytosol	70.59	23.73
TraesCS3D01G255200.1	Wheat	cytosol	70.59	23.73
TraesCS1D01G371200.2	Wheat	cytosol	70.59	23.6
TraesCS3B01G286300.2	Wheat	cytosol	68.91	23.16
Zm00001d009431_P001	Maize	cytosol	71.43	21.25
TraesCS2A01G501900.1	Wheat	cytosol	57.14	16.59
TraesCS2B01G530100.1	Wheat	cytosol	57.14	16.59
TraesCS2D01G502400.1	Wheat	cytosol	57.14	16.59
KXG27307	Sorghum	cytosol	50.42	14.81
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	2.52	1.12
HORVU1Hr1G043190.1	Barley	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4CXB4	PFAM:PF00348	ScanProsite:PS00444	PANTHER:PTHR11525
PANTHER:PTHR11525:SF3	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g005820.1	EnsemblPlants:Solyc10g005820.1.1
UniParc:UPI000276C979	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:642462..644673

Molecular Weight (calculated)

13772.5 Da

IEP (calculated)

5.242

GRAVY (calculated)

-0.437

Length

119 amino acids

Sequence
(BLAST)

001: MGIYFQVQDD YLDCFADPEV LGKIGTDIQD FKCSWLVVKA LEHCNDEQKK LLHENYGKDD PACVAKVKAL YNDLKLEDVY LEYERSTYEK LINSIEAQPS
101: KAVQAVLKSF LAKIYKRQK

Best Arabidopsis Sequence Match ( AT4G17190.2 )
(BLAST)

001: MDNSVTRRGQ PCWFRKPKVG MIAINDGILL RNHIHRILKK HFREMPYYVD LVDLFNEVEF QTACGQMIDL ITTFDGEKDL SKYSLQIHRR IVEYKTAYYS
101: FYLPVACALL MAGENLENHT DVKTVLVDMG IYFQVQDDYL DCFADPETLG KIGTDIEDFK CSWLVVKALE RCSEEQTKIL YENYGKAEPS NVAKVKALYK
201: ELDLEGAFME YEKESYEKLT KLIEAHQSKA IQAVLKSFLA KIYKRQK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.