Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G286300.2 | Wheat | cytosol | 98.02 | 98.02 |
| HORVU3Hr1G065960.4 | Barley | cytosol | 96.89 | 96.62 |
| TraesCS3A01G254300.1 | Wheat | cytosol | 90.68 | 90.68 |
| HORVU2Hr1G073510.1 | Barley | cytosol | 16.95 | 89.55 |
| Os01t0703400-01 | Rice | cytosol, mitochondrion | 88.7 | 88.95 |
| EES01337 | Sorghum | cytosol | 87.57 | 87.08 |
| Zm00001d043727_P001 | Maize | cytosol | 86.44 | 86.2 |
| Zm00001d011673_P001 | Maize | cytosol | 85.88 | 85.63 |
| HORVU6Hr1G033960.1 | Barley | endoplasmic reticulum | 42.09 | 80.98 |
| HORVU7Hr1G080750.1 | Barley | endoplasmic reticulum, plasma membrane | 41.53 | 79.89 |
| TraesCS1D01G371200.2 | Wheat | cytosol | 79.94 | 79.49 |
| KRH11625 | Soybean | cytosol, nucleus | 70.62 | 73.1 |
| VIT_19s0015g01010.t01 | Wine grape | cytosol | 70.06 | 72.73 |
| CDY17706 | Canola | cytosol | 70.06 | 72.3 |
| CDX77796 | Canola | cytosol | 70.06 | 72.3 |
| KRH36635 | Soybean | cytosol, nucleus | 69.77 | 72.22 |
| CDY28904 | Canola | cytosol | 68.93 | 71.34 |
| Bra022156.1-P | Field mustard | cytosol | 68.93 | 71.34 |
| AT4G17190.1 | Thale cress | cytosol | 68.64 | 71.05 |
| Solyc10g005820.1.1 | Tomato | cytosol | 23.73 | 70.59 |
| PGSC0003DMT400022420 | Potato | cytosol | 67.23 | 69.59 |
| TraesCS3D01G258500.1 | Wheat | cytosol | 67.8 | 68.18 |
| KRH63452 | Soybean | cytosol | 23.45 | 68.03 |
| PGSC0003DMT400076602 | Potato | cytosol | 65.54 | 67.84 |
| Solyc12g015860.1.1 | Tomato | cytosol, plastid | 64.97 | 67.25 |
| PGSC0003DMT400037236 | Potato | cytosol | 57.34 | 66.34 |
| Solyc10g005840.2.1 | Tomato | cytosol, mitochondrion | 46.33 | 66.13 |
| Bra024917.1-P | Field mustard | mitochondrion | 67.8 | 64.52 |
| CDY68039 | Canola | cytosol, mitochondrion, plastid | 69.77 | 63.99 |
| AT5G47770.1 | Thale cress | cytosol, mitochondrion | 69.21 | 63.8 |
| KRH30637 | Soybean | cytosol | 15.25 | 61.36 |
| Solyc10g005810.2.1 | Tomato | cytosol, mitochondrion | 40.4 | 53.16 |
| KRG89761 | Soybean | cytosol | 33.62 | 53.12 |
| TraesCS2D01G502400.1 | Wheat | cytosol | 55.08 | 47.56 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G255200.1 | EnsemblPlantsGene:TraesCS3D01G255200 | Gene3D:1.10.600.10 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | InterPro:Polyprenyl_synt |
| InterPro:Polyprenyl_synt_CS | PANTHER:PTHR11525 | PANTHER:PTHR11525:SF11 | PFAM:PF00348 | ScanProsite:PS00444 | ScanProsite:PS00723 |
| SUPFAM:SSF48576 | TIGR:cd00685 | MapMan:9.1.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:356849212..356853493
Molecular Weight (calculated)
39872.5 Da
IEP (calculated)
4.716
GRAVY (calculated)
-0.272
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAVALSN GSGGDSKAEF AEIYSRLKEE MLEDPAFEFT DESLXXXXXM LDYNVLGGKC NRGLSVIDSY KTLKGVDVLR KEETFLACTL GWCIEWLQAY
101: FLVLDDIMDN SQTRRGQPCW FRVPQVGLIA VNDGIILRNH ISRILQRHFR GKPYYVDLID LFNEVEFKTA SGQLLDLITT HEGEKDLTKY NLNVHRRIVQ
201: YKTAYYSFYL PVACALLLSG ENLDNFGDVK NILVEMGTYF QVQDDYLDCF GDPESIGKIG TDIEDYKCSW LVVQALEHAD ESQKGILLEN YGKSDPESVA
301: KVKDLYKELD LETAFHKYER ESYNKLIADI EAQPSKAVQK VLMSFLEKIY KRQK
101: FLVLDDIMDN SQTRRGQPCW FRVPQVGLIA VNDGIILRNH ISRILQRHFR GKPYYVDLID LFNEVEFKTA SGQLLDLITT HEGEKDLTKY NLNVHRRIVQ
201: YKTAYYSFYL PVACALLLSG ENLDNFGDVK NILVEMGTYF QVQDDYLDCF GDPESIGKIG TDIEDYKCSW LVVQALEHAD ESQKGILLEN YGKSDPESVA
301: KVKDLYKELD LETAFHKYER ESYNKLIADI EAQPSKAVQK VLMSFLEKIY KRQK
001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK
Arabidopsis Description
FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.