Factsheet for TraesCS3B01G286300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G255200.1	Wheat	cytosol	98.02	98.02
HORVU3Hr1G065960.4	Barley	cytosol	97.74	97.46
Os01t0703400-01	Rice	cytosol, mitochondrion	89.83	90.08
HORVU2Hr1G073510.1	Barley	cytosol	16.95	89.55
TraesCS3A01G254300.1	Wheat	cytosol	88.7	88.7
EES01337	Sorghum	cytosol	88.7	88.2
Zm00001d043727_P001	Maize	cytosol	87.57	87.32
Zm00001d011673_P001	Maize	cytosol	86.72	86.48
TraesCS1B01G383400.1	Wheat	golgi	80.51	81.43
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	42.09	80.98
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	41.53	79.89
KRH11625	Soybean	cytosol, nucleus	71.47	73.98
VIT_19s0015g01010.t01	Wine grape	cytosol	70.62	73.31
KRH36635	Soybean	cytosol, nucleus	70.62	73.1
CDX77796	Canola	cytosol	70.34	72.59
CDY17706	Canola	cytosol	70.34	72.59
AT4G17190.1	Thale cress	cytosol	69.77	72.22
Bra022156.1-P	Field mustard	cytosol	68.93	71.34
CDY28904	Canola	cytosol	68.93	71.34
PGSC0003DMT400022420	Potato	cytosol	67.51	69.88
Solyc10g005820.1.1	Tomato	cytosol	23.16	68.91
KRH63452	Soybean	cytosol	23.73	68.85
PGSC0003DMT400076602	Potato	cytosol	66.1	68.42
Solyc12g015860.1.1	Tomato	cytosol, plastid	65.82	68.13
PGSC0003DMT400037236	Potato	cytosol	57.34	66.34
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	46.05	65.73
Bra024917.1-P	Field mustard	mitochondrion	68.08	64.78
AT5G47770.1	Thale cress	cytosol, mitochondrion	69.77	64.32
CDY68039	Canola	cytosol, mitochondrion, plastid	69.77	63.99
KRH30637	Soybean	cytosol	15.25	61.36
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	41.24	54.28
KRG89761	Soybean	cytosol	33.62	53.12
TraesCS2B01G530100.1	Wheat	cytosol	55.93	48.29

Protein Annotations

EnsemblPlants:TraesCS3B01G286300.2	EnsemblPlantsGene:TraesCS3B01G286300	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723
SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:	:	:

Description

No Description!

Coordinates

chr3B:-:457976153..457980349

Molecular Weight (calculated)

40561.4 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.274

Length

354 amino acids

Sequence
(BLAST)

001: MAAAAVALSN GSGGDSKAEF AEIYSRLKEE MLEDPAFEFT DESLQWIDRM LDYNVLGGKC NRGLSVIDSY KTLKGVDVLR KEETFLACTL GWCIEWLQAY
101: FLVLDDIMDN SQTRRGQPCW FRVPQVGLIA VNDGIILRNH ISRILQRHFR GKPYYVDLID LFNEVEFKTA SGQLLDLITT HEGEKDLTKY NLNVHRRIVQ
201: YKTAYYSFYL PVACALLLSG ENLDNFGDVK NILVEMGTYF QVQDDYLDCF GDPESIGKIG TDIEDYKCSW LVVQALELAD ESQKGILLEN YGKSEPESVA
301: KVKDLYKELD LETAFHKYER ESYNKLIADI EAQPSKAVQK VLMSFLEKIY KRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.