Factsheet for TraesCS2B01G530100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G502400.1	Wheat	cytosol	99.02	99.02
TraesCS2A01G501900.1	Wheat	cytosol	98.54	98.54
HORVU2Hr1G111540.10	Barley	cytosol, plasma membrane	82.68	97.69
KRH63452	Soybean	cytosol	18.05	60.66
GSMUA_Achr3P28530_001	Banana	cytosol	51.22	60.52
KRH30637	Soybean	cytosol	12.93	60.23
GSMUA_Achr9P22220_001	Banana	cytosol	52.2	59.94
VIT_19s0015g01010.t01	Wine grape	cytosol	49.51	59.53
KRH36635	Soybean	cytosol, nucleus	49.51	59.36
KRH11625	Soybean	cytosol, nucleus	49.02	58.77
CDY28904	Canola	cytosol	48.29	57.89
Bra022156.1-P	Field mustard	cytosol	48.29	57.89
CDY17706	Canola	cytosol	48.29	57.73
CDX77796	Canola	cytosol	48.29	57.73
PGSC0003DMT400022420	Potato	cytosol	48.05	57.6
TraesCS1B01G383400.1	Wheat	golgi	48.78	57.14
Solyc10g005820.1.1	Tomato	cytosol	16.59	57.14
PGSC0003DMT400076602	Potato	cytosol	47.32	56.73
AT4G17190.1	Thale cress	cytosol	47.32	56.73
TraesCS3B01G286300.2	Wheat	cytosol	48.29	55.93
Solyc12g015860.1.1	Tomato	cytosol, plastid	46.59	55.85
PGSC0003DMT400037236	Potato	cytosol	40.24	53.92
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	31.95	52.82
AT5G47770.1	Thale cress	cytosol, mitochondrion	49.02	52.34
Bra024917.1-P	Field mustard	mitochondrion	47.07	51.88
CDY68039	Canola	cytosol, mitochondrion, plastid	48.29	51.3
KRG89761	Soybean	cytosol	26.83	49.11
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	28.78	43.87

Protein Annotations

EnsemblPlants:TraesCS2B01G530100.1	EnsemblPlantsGene:TraesCS2B01G530100	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	ncoils:Coil	PANTHER:PTHR11525	PANTHER:PTHR11525:SF2	PFAM:PF00348	ScanProsite:PS00444
SEG:seg	SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:	:

Description

No Description!

Coordinates

chr2B:+:724755166..724758311

Molecular Weight (calculated)

46973.8 Da

IEP (calculated)

5.263

GRAVY (calculated)

-0.193

Length

410 amino acids

Sequence
(BLAST)

001: MGALAASIAS HVPSGMLSAG LAALAALPNP GELVRKAARL EDELRELLRL NGRGAEARAE QGAGNRAQQT RERFLRAYER LKDELLNDRA FNFDFTEETR
101: QWVAKMLDYN VPGGKLNRGL SVIDSYMLLR EGTEVDEEDF YLACVLGWCI EWLQASALVM DDITDNAYTR RDNLCWYKLP TVGLSAINDG VLLKCHVQAI
201: IKRYFKEKFY FMELMELWNE IGLQTAMGQM LDLITTHTGA KDLARYRIQG YRRIVKYKTS YYSFYLPVAC ALLLNGAKLS DYVELKNVLI EMGVYFQIQD
301: DYLDCFGDPQ VIGKVGTDIE DYKCSWLIVQ AMELANENEM KILYENYGKS CPECVAAVKN VYKELDLQDI FLEYESRVYK HLVSTIDAEP DGAIREILKI
401: FLKKIYRRKK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.