Factsheet for Bra024917.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17706	Canola	cytosol	87.63	95.04
CDX77796	Canola	cytosol	87.1	94.46
Bra022156.1-P	Field mustard	cytosol	83.6	90.94
AT5G47770.1	Thale cress	cytosol, mitochondrion	84.14	81.51
KRH11625	Soybean	cytosol, nucleus	71.77	78.07
KRH36635	Soybean	cytosol, nucleus	71.24	77.49
GSMUA_Achr3P28530_001	Banana	cytosol	66.67	71.47
GSMUA_Achr9P22220_001	Banana	cytosol	67.47	70.31
Zm00001d043727_P001	Maize	cytosol	66.4	69.58
EES01337	Sorghum	cytosol	65.32	68.26
TraesCS3B01G286300.2	Wheat	cytosol	64.78	68.08
TraesCS3D01G255200.1	Wheat	cytosol	64.52	67.8
Zm00001d011673_P001	Maize	cytosol	64.52	67.61
EES19888	Sorghum	cytosol	63.71	67.14
TraesCS1B01G383400.1	Wheat	golgi	62.9	66.86
TraesCS1A01G365800.1	Wheat	cytosol	62.37	66.29
TraesCS1D01G371200.2	Wheat	cytosol	62.63	65.45
KRH63452	Soybean	cytosol	21.24	64.75
TraesCS3A01G254300.1	Wheat	cytosol	61.02	64.12
TraesCS3D01G258500.1	Wheat	cytosol	58.33	61.65
TraesCS3A01G258600.1	Wheat	cytosol	58.33	61.47
Os04t0657300-00	Rice	cytosol, nucleus	3.23	60.0
Zm00001d009431_P001	Maize	cytosol	64.25	59.75
KRH30637	Soybean	cytosol	13.44	56.82
KRG89761	Soybean	cytosol	32.53	54.02
TraesCS2A01G501900.1	Wheat	cytosol	51.88	47.07
TraesCS2D01G502400.1	Wheat	cytosol	51.88	47.07
TraesCS2B01G530100.1	Wheat	cytosol	51.88	47.07
HORVU1Hr1G043190.1	Barley	extracellular	14.25	46.49
KXG27307	Sorghum	cytosol	49.73	45.68

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	EnsemblPlantsGene:Bra024917	EnsemblPlants:Bra024917.1	EnsemblPlants:Bra024917.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4E811	PFAM:PF00348
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI000253FA1B	SEG:seg	:	:	:

Description

AT5G47770 (E=1e-147) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase

Coordinates

chrA06:-:24241816..24243899

Molecular Weight (calculated)

42980.0 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.174

Length

372 amino acids

Sequence
(BLAST)

001: MRLSCCRNMR IAIKAVNLHL HLIRVGSDSL YQSRQLSSSS HHHLLMAKDL KSTFLNVYST LKSELLHDPS FEFTDESRLW VERMLDYNVP GGKLNRGLSV
101: VDSFKLLKEG KDLSEEEIFL SCALGWCIEW LQTYFLVLDD IMDNSVTRRG QPCWFRVPQV GMVAINDGIL LRNHIHRILK KHFRGKPFYV DLVDLFNEVE
201: FQTACGQMID LITTFEGEKD LAKYSLPIHR RIVQYKTAYY SFYLPVACAL LMAGENLENH VDVKNVLVDM GIYFQVQDDY LDCFADPETL GKIGTDIEDF
301: KCSWLVENYG KPDPSNVAKV KELYKELDLE GVFKEYESKS YEKLIGVIEA HQSKAIQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.