CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77796	Canola	cytosol	99.42	99.42
CDY28904	Canola	cytosol	95.63	95.91
Bra024917.1-P	Field mustard	mitochondrion	95.04	87.63
CDY68039	Canola	cytosol, mitochondrion, plastid	95.92	85.23
AT5G47770.1	Thale cress	cytosol, mitochondrion	93.0	83.07
KRH11625	Soybean	cytosol, nucleus	80.17	80.41
KRH36635	Soybean	cytosol, nucleus	79.59	79.82
GSMUA_Achr3P28530_001	Banana	cytosol	74.64	73.78
Zm00001d043727_P001	Maize	cytosol	74.64	72.11
GSMUA_Achr9P22220_001	Banana	cytosol	74.93	71.99
EES01337	Sorghum	cytosol	73.47	70.79
TraesCS3B01G286300.2	Wheat	cytosol	72.59	70.34
TraesCS3D01G255200.1	Wheat	cytosol	72.3	70.06
EES19888	Sorghum	cytosol	71.72	69.69
KRH63452	Soybean	cytosol	24.78	69.67
Zm00001d011673_P001	Maize	cytosol	72.01	69.58
TraesCS1B01G383400.1	Wheat	golgi	70.85	69.43
TraesCS1A01G365800.1	Wheat	cytosol	69.97	68.57
TraesCS1D01G371200.2	Wheat	cytosol	70.55	67.98
TraesCS3A01G254300.1	Wheat	cytosol	68.22	66.1
TraesCS3D01G258500.1	Wheat	cytosol	65.6	63.92
TraesCS3A01G258600.1	Wheat	cytosol	65.6	63.74
KRH30637	Soybean	cytosol	16.04	62.5
Zm00001d009431_P001	Maize	cytosol	72.3	62.0
Os04t0657300-00	Rice	cytosol, nucleus	3.5	60.0
KRG89761	Soybean	cytosol	37.03	56.7
TraesCS2D01G502400.1	Wheat	cytosol	57.73	48.29
TraesCS2B01G530100.1	Wheat	cytosol	57.73	48.29
TraesCS2A01G501900.1	Wheat	cytosol	57.73	48.29
KXG27307	Sorghum	cytosol	54.52	46.17
HORVU1Hr1G043190.1	Barley	extracellular	14.87	44.74

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:A0A078FXF0	UniProt:A0A078FXF0	EnsemblPlants:CDY17706	ProteinID:CDY17706
ProteinID:CDY17706.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00001929001
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525
PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI0004EDC400	:

Description

BnaA06g35250DBnaA06g35250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXF0]

Coordinates

chrLK032076:-:670583..672683

Molecular Weight (calculated)

39676.9 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.197

Length

343 amino acids

Sequence
(BLAST)

001: MAKDLKSTFL NVYSTLKSEL LHDPSFEFTD ESRLWVERML DYNVPGGKLN RGLSVVDSFK LLKEGKDLSE EEIFLSCALG WCIEWLQAYF LVLDDIMDNS
101: VTRRGQPCWF RVPQVGMVAI NDGILLRNHI HRILKKHFRG KPFYVDLVDL FNEVEFQTAC GQMIDLITTF EGEKDLAKYS LPIHRRIVQY KTAYYSFYLP
201: VACALLMAGE NLENHVDVKN VLVDMGIYFQ VQDDYLDCFA DPETLGKIGT DIEDFKCSWL VVKALERCSK EQTEILYENY GKPDPSNVAK VKELYKELDL
301: EGVFKEYESK SYEKLIGVIE AHQSKAIQAV LKSFLAKIYK RQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.