Factsheet for GSMUA_Achr3P28530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22220_001	Banana	cytosol	89.91	87.39
KRH11625	Soybean	cytosol, nucleus	77.81	78.95
KRH36635	Soybean	cytosol, nucleus	76.66	77.78
VIT_19s0015g01010.t01	Wine grape	cytosol	76.08	77.42
PGSC0003DMT400022420	Potato	cytosol	73.78	74.85
CDY17706	Canola	cytosol	73.78	74.64
CDX77796	Canola	cytosol	73.49	74.34
Solyc10g005820.1.1	Tomato	cytosol	25.07	73.11
Bra022156.1-P	Field mustard	cytosol	72.05	73.1
CDY28904	Canola	cytosol	72.05	73.1
AT4G17190.1	Thale cress	cytosol	71.47	72.51
PGSC0003DMT400076602	Potato	cytosol	71.18	72.22
KRH63452	Soybean	cytosol	25.36	72.13
Solyc12g015860.1.1	Tomato	cytosol, plastid	70.03	71.05
PGSC0003DMT400037236	Potato	cytosol	61.38	69.61
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	49.57	69.35
Bra024917.1-P	Field mustard	mitochondrion	71.47	66.67
AT5G47770.1	Thale cress	cytosol, mitochondrion	72.62	65.62
CDY68039	Canola	cytosol, mitochondrion, plastid	72.33	65.03
HORVU2Hr1G111540.10	Barley	cytosol, plasma membrane	60.81	60.81
KRH30637	Soybean	cytosol	15.27	60.23
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	44.67	57.62
KRG89761	Soybean	cytosol	36.89	57.14
TraesCS2A01G501900.1	Wheat	cytosol	60.52	51.22
TraesCS2B01G530100.1	Wheat	cytosol	60.52	51.22
TraesCS2D01G502400.1	Wheat	cytosol	60.52	51.22
Os04t0657100-01	Rice	cytosol	54.47	48.21
KXG27307	Sorghum	cytosol	55.04	47.16

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr3G28530_001
EnsemblPlants:GSMUA_Achr3P28530_001	EnsemblPlants:GSMUA_Achr3T28530_001	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M0SIL9	PFAM:PF00348
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI000294F574	:	:	:	:

Description

Farnesyl pyrophosphate synthase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28530_001]

Coordinates

chr3:-:27779202..27787249

Molecular Weight (calculated)

40025.9 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.217

Length

347 amino acids

Sequence
(BLAST)

001: MVVGDEGDLK ATFRQVYGRL KSELFEDAAF DYTDEARQWI DRMLDYNVPG GKLNRGISVI DSYKLLKEGT QLSNEEVFLG CALGWCIEWL QAYFLVLDDI
101: MDNSHTRRGQ LCWFRVPKVG LIAVNDGILL RNHIPQILKR HFKGKPYYVD LLDLFNEVEF QTASGQMLDL ITTHEGEKDL SKYTMTVYNR IVQYKTAYYS
201: FYLPVACALL LAGENLDNFV DVKNILVEMG TYFQVQDDYL DCFGDPEVIG KIGTDIEDFK CSWLVVQALE RANESQIKFL LDNYGKSDPT SVAKVKSIYR
301: DLDLQNVFSE YERTSYERLI SAIEALPSKA VQDVLKSFLH KIYKRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.