CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28904	Canola	cytosol	87.82	99.12
CDX77796	Canola	cytosol	85.49	96.21
CDY17706	Canola	cytosol	85.23	95.92
AT5G47770.1	Thale cress	cytosol, mitochondrion	85.75	86.2
KRH11625	Soybean	cytosol, nucleus	70.73	79.82
KRH36635	Soybean	cytosol, nucleus	70.21	79.24
GSMUA_Achr3P28530_001	Banana	cytosol	65.03	72.33
GSMUA_Achr9P22220_001	Banana	cytosol	65.8	71.15
Zm00001d043727_P001	Maize	cytosol	65.28	70.99
EES01337	Sorghum	cytosol	64.51	69.94
TraesCS3D01G255200.1	Wheat	cytosol	63.99	69.77
TraesCS3B01G286300.2	Wheat	cytosol	63.99	69.77
KRH63452	Soybean	cytosol	21.76	68.85
Zm00001d011673_P001	Maize	cytosol	63.21	68.73
TraesCS1B01G383400.1	Wheat	golgi	61.92	68.29
EES19888	Sorghum	cytosol	62.44	68.27
TraesCS1A01G365800.1	Wheat	cytosol	61.66	68.0
TraesCS1D01G371200.2	Wheat	cytosol	62.18	67.42
TraesCS3A01G254300.1	Wheat	cytosol	60.62	66.1
TraesCS3A01G258600.1	Wheat	cytosol	57.77	63.17
TraesCS3D01G258500.1	Wheat	cytosol	57.51	63.07
KRH30637	Soybean	cytosol	14.25	62.5
Zm00001d009431_P001	Maize	cytosol	63.21	61.0
Os04t0657300-00	Rice	cytosol, nucleus	3.11	60.0
KRG89761	Soybean	cytosol	32.64	56.25
TraesCS2A01G501900.1	Wheat	cytosol	51.3	48.29
TraesCS2D01G502400.1	Wheat	cytosol	51.3	48.29
TraesCS2B01G530100.1	Wheat	cytosol	51.3	48.29
KXG27307	Sorghum	cytosol	49.22	46.91
HORVU1Hr1G043190.1	Barley	extracellular	13.47	45.61

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:A0A078JML3	UniProt:A0A078JML3	EnsemblPlants:CDY68039	ProteinID:CDY68039
ProteinID:CDY68039.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00069140001	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11
InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI0004EDF00E	SEG:seg	:

Description

BnaCnng57390DBnaCnng57390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JML3]

Coordinates

chrLK036794:+:4666..6813

Molecular Weight (calculated)

44398.7 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.226

Length

386 amino acids

Sequence
(BLAST)

001: MSVSGCCRNL RITIKAVLHL RLRPPRGSSP YRRIQSRHLS SSSSMADLKS TFLNVYSTLK SDLLHDPSFE FTDASRLWVE KMLDYNVPGG KLNRGLSVVD
101: SFKLLKEGED LTEEEVFLSC ALGWCIEWLQ AYFLVLDDIM DNSVTRRGQP CWFRVPQVGM VAINDGILLR NHIHRILKKH FRGKPYYVDL VDLFNEVEMQ
201: TACGQMIDLI TTFEGEKDLA KYSLPIHRRI VQYKTAYYSF YLPVACALLM AGENLENHID VKNVLVDMGI YFQVQDDYLD CFADPETLGK IGTDIEDFKC
301: SWLVVKALER CSKEQTEILY ENYGKPDPSN VAKVKELYKE LDLEGVFKEY ESKSYEKLTG VIEAHKSKAI QAVLKSFLAK IYKRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.