Factsheet for TraesCS3A01G258600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G258500.1	Wheat	cytosol	91.5	91.76
HORVU3Hr1G065190.1	Barley	cytosol	86.97	86.97
Os01t0695300-01	Rice	cytosol	73.37	84.36
Solyc10g005820.1.1	Tomato	cytosol	24.08	71.43
TraesCS1A01G365800.1	Wheat	cytosol	69.12	69.71
KRH36635	Soybean	cytosol, nucleus	65.44	67.54
KRH11625	Soybean	cytosol, nucleus	65.44	67.54
VIT_19s0015g01010.t01	Wine grape	cytosol	65.16	67.45
CDY17706	Canola	cytosol	63.74	65.6
KRH63452	Soybean	cytosol	22.66	65.57
PGSC0003DMT400022420	Potato	cytosol	63.46	65.5
CDX77796	Canola	cytosol	63.46	65.31
AT4G17190.1	Thale cress	cytosol	63.17	65.2
PGSC0003DMT400076602	Potato	cytosol	62.61	64.62
CDY28904	Canola	cytosol	62.32	64.33
Bra022156.1-P	Field mustard	cytosol	62.32	64.33
Solyc12g015860.1.1	Tomato	cytosol, plastid	62.32	64.33
TraesCS3A01G254300.1	Wheat	cytosol	64.31	64.12
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	44.48	63.31
PGSC0003DMT400037236	Potato	cytosol	53.82	62.09
KRH30637	Soybean	cytosol	15.01	60.23
Bra024917.1-P	Field mustard	mitochondrion	61.47	58.33
CDY68039	Canola	cytosol, mitochondrion, plastid	63.17	57.77
AT5G47770.1	Thale cress	cytosol, mitochondrion	62.04	57.03
KRG89761	Soybean	cytosol	33.99	53.57
TraesCS2A01G501900.1	Wheat	cytosol	58.36	50.24
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	35.98	47.21

Protein Annotations

EnsemblPlants:TraesCS3A01G258600.1	EnsemblPlantsGene:TraesCS3A01G258600	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	PANTHER:PTHR11525	PANTHER:PTHR11525:SF3	PFAM:PF00348	ScanProsite:PS00723	SEG:seg
SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:	:	:

Description

No Description!

Coordinates

chr3A:+:480435326..480437967

Molecular Weight (calculated)

40693.5 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.269

Length

353 amino acids

Sequence
(BLAST)

001: MAAAAQGEAS TGATTTATFR RVYETLKAEL LRDGYFHFND DALRWLDAML DYNVLGGKLN RGLAVVESYK SLKAGSEPSE EEEFLACVLG WGIEWLQAYF
101: LILDDIMDNS QTRRGKPCWY RLPKVGLIAI NDGLLLRSQI SRIFKRYFYG KPYYVDLLDL FNEVEFKTTS GELLDQITTS EGQKDLSKYT VDVYRRIVEY
201: KTAYYSFYLP VGCALLLSGR NLDDYVQVKH ILVEMGVYFQ SQDDYLDCFG DPEVMGKVGT DIEDFKCSWL FVQALVRVDE RQKDILFENY GKSDPACVAK
301: VKALYKELNL ERVFSEYESE TYEKLISDIE AQPNEAVQAV LKSFLHKIYR RRK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.