CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0657300-00	Rice	cytosol, nucleus	9.02	55.0
KRH30637	Soybean	cytosol	39.34	54.55
KRG89761	Soybean	cytosol	87.7	47.77
KRH36635	Soybean	cytosol, nucleus	94.26	33.63
KRH11625	Soybean	cytosol, nucleus	90.98	32.46
GSMUA_Achr3P28530_001	Banana	cytosol	72.13	25.36
AT4G17190.1	Thale cress	cytosol	69.67	24.85
Bra022156.1-P	Field mustard	cytosol	69.67	24.85
CDY28904	Canola	cytosol	69.67	24.85
CDX77796	Canola	cytosol	69.67	24.78
CDY17706	Canola	cytosol	69.67	24.78
GSMUA_Achr9P22220_001	Banana	cytosol	71.31	24.37
EES19888	Sorghum	cytosol	69.67	24.08
TraesCS3B01G286300.2	Wheat	cytosol	68.85	23.73
Zm00001d043727_P001	Maize	cytosol	68.85	23.66
EES01337	Sorghum	cytosol	68.85	23.6
TraesCS3D01G255200.1	Wheat	cytosol	68.03	23.45
TraesCS3A01G254300.1	Wheat	cytosol	68.03	23.45
Zm00001d011673_P001	Maize	cytosol	68.03	23.38
TraesCS1B01G383400.1	Wheat	golgi	66.39	23.14
TraesCS1A01G365800.1	Wheat	cytosol	65.57	22.86
TraesCS1D01G371200.2	Wheat	cytosol	66.39	22.75
TraesCS3D01G258500.1	Wheat	cytosol	65.57	22.73
TraesCS3A01G258600.1	Wheat	cytosol	65.57	22.66
AT5G47770.1	Thale cress	cytosol, mitochondrion	69.67	22.14
CDY68039	Canola	cytosol, mitochondrion, plastid	68.85	21.76
Bra024917.1-P	Field mustard	mitochondrion	64.75	21.24
Zm00001d009431_P001	Maize	cytosol	67.21	20.5
TraesCS2D01G502400.1	Wheat	cytosol	60.66	18.05
TraesCS2B01G530100.1	Wheat	cytosol	60.66	18.05
TraesCS2A01G501900.1	Wheat	cytosol	60.66	18.05
KXG27307	Sorghum	cytosol	45.9	13.83
HORVU1Hr1G043190.1	Barley	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	UniProt:A0A0R0K9H9	EMBL:ACUP02002692	EnsemblPlantsGene:GLYMA_04G177500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004161	GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:KRH63452
ProteinID:KRH63452	ProteinID:KRH63452.1	PFAM:PF00348	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt
SUPFAM:SSF48576	UniParc:UPI0006EDCDB7	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:44127707..44128713

Molecular Weight (calculated)

13820.5 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.206

Length

122 amino acids

Sequence
(BLAST)

001: VTYALLMVGE DLDKNVDVKN ILVEMGTYFQ DDYLDCFGDT QTIGKIGTDI EDFKCSWLIV KAVELSNEQQ KKVLQALYNE LNLQEYESGS YAKVVSSIEA
101: HPSKAVQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.