CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36635	Soybean	cytosol, nucleus	96.49	96.49
KRH63452	Soybean	cytosol	32.46	90.98
CDX77796	Canola	cytosol	80.41	80.17
CDY17706	Canola	cytosol	80.41	80.17
Bra022156.1-P	Field mustard	cytosol	79.82	79.82
CDY28904	Canola	cytosol	79.82	79.82
KRH30637	Soybean	cytosol	20.47	79.55
AT4G17190.1	Thale cress	cytosol	79.24	79.24
GSMUA_Achr3P28530_001	Banana	cytosol	78.95	77.81
GSMUA_Achr9P22220_001	Banana	cytosol	79.53	76.19
Zm00001d043727_P001	Maize	cytosol	74.56	71.83
Bra024917.1-P	Field mustard	mitochondrion	78.07	71.77
EES01337	Sorghum	cytosol	74.56	71.63
TraesCS3B01G286300.2	Wheat	cytosol	73.98	71.47
Zm00001d011673_P001	Maize	cytosol	73.98	71.27
CDY68039	Canola	cytosol, mitochondrion, plastid	79.82	70.73
TraesCS3D01G255200.1	Wheat	cytosol	73.1	70.62
AT5G47770.1	Thale cress	cytosol, mitochondrion	79.24	70.57
TraesCS1A01G365800.1	Wheat	cytosol	71.64	70.0
TraesCS1B01G383400.1	Wheat	golgi	71.64	70.0
EES19888	Sorghum	cytosol	72.22	69.97
TraesCS1D01G371200.2	Wheat	cytosol	71.93	69.1
KRG89761	Soybean	cytosol	44.44	67.86
TraesCS3A01G254300.1	Wheat	cytosol	69.59	67.23
TraesCS3D01G258500.1	Wheat	cytosol	67.54	65.62
TraesCS3A01G258600.1	Wheat	cytosol	67.54	65.44
Zm00001d009431_P001	Maize	cytosol	73.68	63.0
Os04t0657300-00	Rice	cytosol, nucleus	3.22	55.0
TraesCS2A01G501900.1	Wheat	cytosol	58.77	49.02
TraesCS2D01G502400.1	Wheat	cytosol	58.77	49.02
TraesCS2B01G530100.1	Wheat	cytosol	58.77	49.02
KXG27307	Sorghum	cytosol	54.39	45.93
HORVU1Hr1G043190.1	Barley	extracellular	14.33	42.98

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	EMBL:ACUP02009229	EnsemblPlantsGene:GLYMA_15G121400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004161	GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0045337	UniProt:I1MFU1	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:KRH11625
ProteinID:KRH11625	ProteinID:KRH11625.1	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525
PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI000233B739	:

Description

hypothetical protein

Coordinates

chr15:+:9594299..9598460

Molecular Weight (calculated)

39203.9 Da

IEP (calculated)

5.636

GRAVY (calculated)

-0.253

Length

342 amino acids

Sequence
(BLAST)

001: MADLKSTFLN VYSVLKSELL HDPAFEFSDD ARNWVDRMLD YNVPGGKLNR GLSVIDSYRL LKEGQALNDD EIFHASALGW CIEWLQAYFL VLDDIMDNSH
101: TRRGQPCWFR VPKVGMIAAN DGVLLRNHIP RILKKHFRGK PYYVDLLDLF NEVEFQTASG QMIDLITTLE GEKDLSKYTL TLHRRIVQYK TAYYSFYLPV
201: ACALLMAGED LDNHVDVKNI LVEMGTYFQV QDDYLDCFGD PQTIGKIGTD IEDFKCSWLV VKALELSNEQ QKKVLHENYG KADPENVAKV KALYNELNLQ
301: AVFEEYENGS YAKLVSSIEA HPSKAVQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.