Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17706 | Canola | cytosol | 99.42 | 99.42 |
| CDY28904 | Canola | cytosol | 95.92 | 96.2 |
| Bra024917.1-P | Field mustard | mitochondrion | 94.46 | 87.1 |
| CDY68039 | Canola | cytosol, mitochondrion, plastid | 96.21 | 85.49 |
| AT5G47770.1 | Thale cress | cytosol, mitochondrion | 93.29 | 83.33 |
| KRH11625 | Soybean | cytosol, nucleus | 80.17 | 80.41 |
| KRH36635 | Soybean | cytosol, nucleus | 79.59 | 79.82 |
| GSMUA_Achr3P28530_001 | Banana | cytosol | 74.34 | 73.49 |
| GSMUA_Achr9P22220_001 | Banana | cytosol | 74.93 | 71.99 |
| Zm00001d043727_P001 | Maize | cytosol | 74.34 | 71.83 |
| EES01337 | Sorghum | cytosol | 73.18 | 70.51 |
| TraesCS3B01G286300.2 | Wheat | cytosol | 72.59 | 70.34 |
| TraesCS3D01G255200.1 | Wheat | cytosol | 72.3 | 70.06 |
| KRH63452 | Soybean | cytosol | 24.78 | 69.67 |
| EES19888 | Sorghum | cytosol | 71.43 | 69.41 |
| Zm00001d011673_P001 | Maize | cytosol | 71.72 | 69.3 |
| TraesCS1B01G383400.1 | Wheat | golgi | 70.55 | 69.14 |
| TraesCS1A01G365800.1 | Wheat | cytosol | 70.26 | 68.86 |
| TraesCS1D01G371200.2 | Wheat | cytosol | 70.85 | 68.26 |
| TraesCS3A01G254300.1 | Wheat | cytosol | 68.22 | 66.1 |
| TraesCS3D01G258500.1 | Wheat | cytosol | 65.31 | 63.64 |
| TraesCS3A01G258600.1 | Wheat | cytosol | 65.31 | 63.46 |
| KRH30637 | Soybean | cytosol | 16.04 | 62.5 |
| Zm00001d009431_P001 | Maize | cytosol | 72.3 | 62.0 |
| Os04t0657300-00 | Rice | cytosol, nucleus | 3.5 | 60.0 |
| KRG89761 | Soybean | cytosol | 37.03 | 56.7 |
| TraesCS2A01G501900.1 | Wheat | cytosol | 57.73 | 48.29 |
| TraesCS2D01G502400.1 | Wheat | cytosol | 57.73 | 48.29 |
| TraesCS2B01G530100.1 | Wheat | cytosol | 57.73 | 48.29 |
| KXG27307 | Sorghum | cytosol | 54.52 | 46.17 |
| HORVU1Hr1G043190.1 | Barley | extracellular | 14.58 | 43.86 |
Protein Annotations
| Gene3D:1.10.600.10 | MapMan:9.1.3.2 | GO:A0A078CKR8 | EnsemblPlants:CDX77796 | ProteinID:CDX77796 | ProteinID:CDX77796.1 |
| ncoils:Coil | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008299 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00128835001 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | PFAM:PF00348 | ScanProsite:PS00444 |
| ScanProsite:PS00723 | PANTHER:PTHR11525 | PANTHER:PTHR11525:SF11 | InterPro:Polyprenyl_synt | InterPro:Polyprenyl_synt_CS | SUPFAM:SSF48576 |
| UniParc:UPI0004EF10F0 | : | : | : | : | : |
Description
BnaC07g20500D
Coordinates
chrLK031812:+:1870375..1872909
Molecular Weight (calculated)
39691.8 Da
IEP (calculated)
5.081
GRAVY (calculated)
-0.196
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDLKSTFL NVYSTLKSEL LHDPSFEFTD ESRLWVERML DYNVPGGKLN RGLSVVDSFK LLKEGKDLTE EEIFLSCALG WCIEWLQAYF LVLDDIMDNS
101: VTRRGQPCWF RVPQVGMVAI NDGILLRNHI HRILKKHFRG KPFYVDLVDL FNEVEFQTAC GQMIDLITTF EGEKDLAKYS LPIHRRIVQY KTAYYSFYLP
201: VACALLMAGE NLENHVDVKN VLVDMGIYFQ VQDDYLDCFA DPETLGKIGT DIEDFKCSWL VVKALERCSK EQTEILYENY GKPDPSNVAK VKELYKELDL
301: EGVFKEYESK SYEKLIGVIE AHQSKAIQAV LKSFLAKIYK RQK
101: VTRRGQPCWF RVPQVGMVAI NDGILLRNHI HRILKKHFRG KPFYVDLVDL FNEVEFQTAC GQMIDLITTF EGEKDLAKYS LPIHRRIVQY KTAYYSFYLP
201: VACALLMAGE NLENHVDVKN VLVDMGIYFQ VQDDYLDCFA DPETLGKIGT DIEDFKCSWL VVKALERCSK EQTEILYENY GKPDPSNVAK VKELYKELDL
301: EGVFKEYESK SYEKLIGVIE AHQSKAIQAV LKSFLAKIYK RQK
001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK
Arabidopsis Description
FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.