Factsheet for TraesCS1D01G371200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365800.1	Wheat	cytosol	95.79	97.43
TraesCS1B01G383400.1	Wheat	golgi	94.94	96.57
HORVU1Hr1G079070.1	Barley	cytosol	87.92	95.14
EES19888	Sorghum	cytosol	85.96	86.69
Os05t0543400-01	Rice	cytosol	82.87	83.1
TraesCS3D01G255200.1	Wheat	cytosol	79.49	79.94
Zm00001d009431_P001	Maize	cytosol	87.08	77.5
VIT_19s0015g01010.t01	Wine grape	cytosol	69.1	72.14
KRH11625	Soybean	cytosol, nucleus	69.1	71.93
KRH36635	Soybean	cytosol, nucleus	68.82	71.64
CDX77796	Canola	cytosol	68.26	70.85
Solyc10g005820.1.1	Tomato	cytosol	23.6	70.59
CDY17706	Canola	cytosol	67.98	70.55
CDY28904	Canola	cytosol	67.7	70.47
Bra022156.1-P	Field mustard	cytosol	67.7	70.47
AT4G17190.1	Thale cress	cytosol	66.57	69.3
PGSC0003DMT400022420	Potato	cytosol	66.57	69.3
TraesCS3D01G258500.1	Wheat	cytosol	68.26	69.03
PGSC0003DMT400076602	Potato	cytosol	64.33	66.96
Solyc12g015860.1.1	Tomato	cytosol, plastid	64.04	66.67
KRH63452	Soybean	cytosol	22.75	66.39
PGSC0003DMT400037236	Potato	cytosol	56.46	65.69
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	44.94	64.52
AT5G47770.1	Thale cress	cytosol, mitochondrion	67.98	63.02
Bra024917.1-P	Field mustard	mitochondrion	65.45	62.63
CDY68039	Canola	cytosol, mitochondrion, plastid	67.42	62.18
KRH30637	Soybean	cytosol	14.04	56.82
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	39.89	52.79
KRG89761	Soybean	cytosol	32.58	51.79
TraesCS2D01G502400.1	Wheat	cytosol	56.46	49.02

Protein Annotations

EnsemblPlants:TraesCS1D01G371200.2	EnsemblPlantsGene:TraesCS1D01G371200	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723
SEG:seg	SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:	:

Description

No Description!

Coordinates

chr1D:-:449470319..449473475

Molecular Weight (calculated)

40779.0 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.160

Length

356 amino acids

Sequence
(BLAST)

001: MAAAAVNGGG GENKAAFARI YDALKAELLR DPAFEYTESS RQWIDRMLDY NVLGGKCNRG LSVVDSYKLL KGVDVLTEEE MFLASTLGWC IEWLQAFFLV
101: LDDIMDDSHT RRGQPCWFRV SQVGLIAVND GILLRNHISR MLRLHFKKKP YYADLLDLFN EVEFKTASGQ MLDLITTHEG EKDLTKYNIG VHRRIVQFKT
201: AYYSFYLPVA CALLLSGESL ENYSAVENIL VEMGTYFQVQ DDYLDCYGDP EFIGKIGTDI EDYKCSWLVV QALERADESQ KSILFLMLLQ ENYGKKDPAC
301: VAKVKDLYKE LNLEAVFHEY ESESYKKLIA DIEAQPSVAV QKVLKSFLHK IYMRQK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.