Factsheet for Solyc10g005840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005820.1.1	Tomato	cytosol	38.71	80.67
PGSC0003DMT400037236	Potato	cytosol	89.52	72.55
Solyc12g015860.1.1	Tomato	cytosol, plastid	76.21	55.26
VIT_19s0015g01010.t01	Wine grape	cytosol	75.81	55.13
Os04t0657300-00	Rice	cytosol, nucleus	4.03	50.0
GSMUA_Achr3P28530_001	Banana	cytosol	69.35	49.57
GSMUA_Achr9P22220_001	Banana	cytosol	69.35	48.18
EES01337	Sorghum	cytosol	68.15	47.47
Zm00001d043727_P001	Maize	cytosol	67.74	47.32
EES19888	Sorghum	cytosol	66.13	46.46
TraesCS3A01G254300.1	Wheat	cytosol	66.13	46.33
TraesCS3D01G255200.1	Wheat	cytosol	66.13	46.33
Zm00001d011673_P001	Maize	cytosol	66.13	46.2
TraesCS3B01G286300.2	Wheat	cytosol	65.73	46.05
TraesCS1B01G383400.1	Wheat	golgi	64.92	46.0
TraesCS1A01G365800.1	Wheat	cytosol	64.52	45.71
TraesCS1D01G371200.2	Wheat	cytosol	64.52	44.94
TraesCS3A01G258600.1	Wheat	cytosol	63.31	44.48
TraesCS3D01G258500.1	Wheat	cytosol	62.1	43.75
Zm00001d009431_P001	Maize	cytosol	66.13	41.0
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	36.29	33.46
TraesCS2A01G501900.1	Wheat	cytosol	52.82	31.95
TraesCS2B01G530100.1	Wheat	cytosol	52.82	31.95
TraesCS2D01G502400.1	Wheat	cytosol	52.82	31.95
KXG27307	Sorghum	cytosol	48.39	29.63
HORVU1Hr1G043190.1	Barley	extracellular	1.21	2.63

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161
GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4CXB6	PFAM:PF00348	ScanProsite:PS00444
PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g005840.2
EnsemblPlants:Solyc10g005840.2.1	UniParc:UPI000276C97B	:	:	:	:

Description

No Description!

Coordinates

chr10:+:651018..655936

Molecular Weight (calculated)

28819.7 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.400

Length

248 amino acids

Sequence
(BLAST)

001: MDGSSKRRGQ PCWFRLDKVG MIAVNDGVLL RNHIAVILKQ HFRGKPYYVD LLELFNEVEY QTACGQMIDL ITTQEKDLSK YSLSIHGRIV QYKTAYYSFY
101: LPVACALLMA GENLDNHANA KDILIKMGIY FQVQDDYLDC FADPQVLGKN GTDIKDFKCS WLVVKALERC NEEQKKILDE NYGIDDKACV AKIEALYKDL
201: KLEDVYREYE ENTYEELINT IEDEETKLSK PMQAVLKSFL EKIYKRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.