Factsheet for Solyc10g005810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022420	Potato	cytosol	73.23	57.6
VIT_19s0015g01010.t01	Wine grape	cytosol	62.45	49.27
Solyc12g015860.1.1	Tomato	cytosol, plastid	62.45	49.12
GSMUA_Achr3P28530_001	Banana	cytosol	57.62	44.67
GSMUA_Achr9P22220_001	Banana	cytosol	59.11	44.54
HORVU1Hr1G043190.1	Barley	extracellular	18.22	42.98
TraesCS3B01G286300.2	Wheat	cytosol	54.28	41.24
TraesCS1A01G365800.1	Wheat	cytosol	52.79	40.57
TraesCS3D01G255200.1	Wheat	cytosol	53.16	40.4
Zm00001d043727_P001	Maize	cytosol	53.16	40.28
EES01337	Sorghum	cytosol	53.16	40.17
Zm00001d011673_P001	Maize	cytosol	52.79	40.0
TraesCS1D01G371200.2	Wheat	cytosol	52.79	39.89
TraesCS1B01G383400.1	Wheat	golgi	51.67	39.71
EES19888	Sorghum	cytosol	52.04	39.66
TraesCS3A01G254300.1	Wheat	cytosol	49.44	37.57
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	33.46	36.29
TraesCS3A01G258600.1	Wheat	cytosol	47.21	35.98
TraesCS3D01G258500.1	Wheat	cytosol	46.84	35.8
Zm00001d009431_P001	Maize	cytosol	53.16	35.75
KXG27307	Sorghum	cytosol	44.61	29.63
TraesCS2B01G530100.1	Wheat	cytosol	43.87	28.78
TraesCS2D01G502400.1	Wheat	cytosol	43.87	28.78
TraesCS2A01G501900.1	Wheat	cytosol	43.49	28.54
Os04t0657300-00	Rice	cytosol, nucleus	0.74	10.0
Solyc10g005820.1.1	Tomato	cytosol	1.12	2.52

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4CXB3	PFAM:PF00348	ScanProsite:PS00723	PANTHER:PTHR11525
PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc10g005810.2	EnsemblPlants:Solyc10g005810.2.1
UniParc:UPI000276C978	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:639074..642231

Molecular Weight (calculated)

31520.0 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.391

Length

269 amino acids

Sequence
(BLAST)

001: MYLQHKGRLL LTNYKCSLSL LNQIHSYLDP IYEKEEKHCI QKSQKFSSLS EINENNSFFS GKMSDLKSKF LDVYKILKSE LLNDPDFEFT DDGRQWVERM
101: LDYNVPGGKL NRGLSVIDSY SLLKEGKELT SEEIFQTSSL GWCIEWLQAY FLVLDDMMDG SHTRRGQKCW FRLPKVGMIA ANDGILLRNH IPRILKKHFR
201: GKPYYVDLLE LFNEVEFQTA SGQMIDLITT HSGEKDLSKY SLPIHRRIVQ YKTAYYSFYL PVSMMFLPN

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.