Factsheet for PGSC0003DMT400022420

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005820.1.1	Tomato	cytosol	33.63	96.64
PGSC0003DMT400076602	Potato	cytosol	83.63	83.63
PGSC0003DMT400037236	Potato	cytosol	73.68	82.35
VIT_19s0015g01010.t01	Wine grape	cytosol	81.29	81.52
GSMUA_Achr3P28530_001	Banana	cytosol	74.85	73.78
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	57.6	73.23
GSMUA_Achr9P22220_001	Banana	cytosol	76.02	72.83
Zm00001d043727_P001	Maize	cytosol	71.34	68.73
EES01337	Sorghum	cytosol	71.34	68.54
Zm00001d011673_P001	Maize	cytosol	70.76	68.17
TraesCS1A01G365800.1	Wheat	cytosol	69.3	67.71
TraesCS3B01G286300.2	Wheat	cytosol	69.88	67.51
TraesCS3D01G255200.1	Wheat	cytosol	69.59	67.23
TraesCS1B01G383400.1	Wheat	golgi	68.71	67.14
EES19888	Sorghum	cytosol	69.3	67.14
TraesCS1D01G371200.2	Wheat	cytosol	69.3	66.57
TraesCS3A01G254300.1	Wheat	cytosol	66.37	64.12
TraesCS3A01G258600.1	Wheat	cytosol	65.5	63.46
TraesCS3D01G258500.1	Wheat	cytosol	65.2	63.35
Zm00001d009431_P001	Maize	cytosol	70.47	60.25
Os04t0657300-00	Rice	cytosol, nucleus	3.22	55.0
TraesCS2B01G530100.1	Wheat	cytosol	57.6	48.05
TraesCS2D01G502400.1	Wheat	cytosol	57.6	48.05
TraesCS2A01G501900.1	Wheat	cytosol	57.31	47.8
KXG27307	Sorghum	cytosol	54.39	45.93
HORVU1Hr1G043190.1	Barley	extracellular	14.33	42.98

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1AGP3	PFAM:PF00348	EnsemblPlantsGene:PGSC0003DMG400008690	PGSC:PGSC0003DMG400008690	EnsemblPlants:PGSC0003DMT400022420
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI000295652A	:	:	:	:

Description

Dimethylallyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400008690]

Coordinates

chr10:+:854194..861002

Molecular Weight (calculated)

39652.8 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.310

Length

342 amino acids

Sequence
(BLAST)

001: MSDLKSKFLG VYKVLKSELL NDPDFEFTDD DRQWVERMLD YNVPGGKLNR GLSVIDSYSL LKEGKELTSE EIFQTSSLGW CIEWLQAYFL VLDDIMDGSH
101: TRRGQKCWFR LPKVGMIAAN DGILLRNHIP RILKKHFRGK PYYVDLLELF NEVEFQTASG QMIDLITTHF GEKDLSKYSL PIHRRIVQYK TAYYSFYLPV
201: ACALLMAGEN LDNHVNVKNI LLEMGIYFQV QDDYLDCFAD PEVLGKIGTD IQDFKCSWLV VKALEHCNDE QKKLLHENYG KDDPACVTKV KALYNDLKLE
301: DVYLEYEKST YEKLINSIDA QPTKAVQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.