Factsheet for Zm00001d043727_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01337	Sorghum	cytosol	93.24	92.98
Zm00001d011673_P001	Maize	cytosol	90.99	90.99
Os01t0703400-01	Rice	cytosol, mitochondrion	89.58	90.08
HORVU2Hr1G073510.1	Barley	cytosol	16.62	88.06
HORVU3Hr1G065960.4	Barley	cytosol	87.61	87.61
TraesCS3B01G286300.2	Wheat	cytosol	87.32	87.57
TraesCS3D01G255200.1	Wheat	cytosol	86.2	86.44
TraesCS3A01G254300.1	Wheat	cytosol	80.0	80.23
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	40.85	78.8
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	40.56	78.26
VIT_19s0015g01010.t01	Wine grape	cytosol	72.11	75.07
CDY17706	Canola	cytosol	72.11	74.64
KRH11625	Soybean	cytosol, nucleus	71.83	74.56
CDX77796	Canola	cytosol	71.83	74.34
Solyc10g005820.1.1	Tomato	cytosol	24.79	73.95
KRH36635	Soybean	cytosol, nucleus	70.99	73.68
Zm00001d009431_P001	Maize	cytosol	82.82	73.5
CDY28904	Canola	cytosol	70.42	73.1
Bra022156.1-P	Field mustard	cytosol	70.42	73.1
AT4G17190.1	Thale cress	cytosol	70.14	72.81
PGSC0003DMT400022420	Potato	cytosol	68.73	71.34
PGSC0003DMT400076602	Potato	cytosol	67.32	69.88
Solyc12g015860.1.1	Tomato	cytosol, plastid	66.76	69.3
KRH63452	Soybean	cytosol	23.66	68.85
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	47.32	67.74
PGSC0003DMT400037236	Potato	cytosol	58.31	67.65
Bra024917.1-P	Field mustard	mitochondrion	69.58	66.4
AT5G47770.1	Thale cress	cytosol, mitochondrion	70.99	65.62
CDY68039	Canola	cytosol, mitochondrion, plastid	70.99	65.28
KRH30637	Soybean	cytosol	14.93	60.23
KRG89761	Soybean	cytosol	34.65	54.91
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	40.28	53.16

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:100273420	MapMan:9.1.3.2	UniProt:B4FVE3	EMBL:BT041081	EMBL:BT085025
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	ProteinID:ONM38909.1
PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI00017B77FE	EnsemblPlantsGene:Zm00001d043727	EnsemblPlants:Zm00001d043727_P001	EnsemblPlants:Zm00001d043727_T001

Description

farnesyl diphosphate synthase3 farnesyl diphosphate synthase3

Coordinates

chr3:-:208452423..208456825

Molecular Weight (calculated)

40807.9 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.224

Length

355 amino acids

Sequence
(BLAST)

001: MATAEVVVAN GSGGADTKTA FKEIYSKLKQ EMLEDPAFEF TDESLQWIDR MLDYNVLGGK CNRGLSVVDS YKILKGVDVL SKEETFLACT LGWCIEWLQA
101: YFLVLDDIMD NSQTRRGQPC WFRVPQVGLI AVNDGIILRN HISRILQRHF KGKPYYVDII DLFNEVEFKT ASGQMLDLIT THEGEKDLTK YNLTVHRRIV
201: QYKTAYYSFY LPVACALLLA GENLENFVDV KNILVEMGTY FQVQDDYLDC FGDPEFIGKI GTDIEDYKCS WLVVQALERA AENQKSILFE NYGKSDPACV
301: AKVKDLYKEL KLEEVFHEYE RESYNKLIAD IEAQPSKAVQ TVLKSFLHKI YKRDK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.