Factsheet for PGSC0003DMT400076602

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g015860.1.1	Tomato	cytosol, plastid	93.57	93.57
PGSC0003DMT400022420	Potato	cytosol	83.63	83.63
VIT_19s0015g01010.t01	Wine grape	cytosol	79.24	79.47
PGSC0003DMT400037236	Potato	cytosol	67.84	75.82
GSMUA_Achr3P28530_001	Banana	cytosol	72.22	71.18
GSMUA_Achr9P22220_001	Banana	cytosol	71.93	68.91
Zm00001d043727_P001	Maize	cytosol	69.88	67.32
EES01337	Sorghum	cytosol	69.88	67.13
Zm00001d011673_P001	Maize	cytosol	69.01	66.48
TraesCS3B01G286300.2	Wheat	cytosol	68.42	66.1
TraesCS3D01G255200.1	Wheat	cytosol	67.84	65.54
TraesCS1B01G383400.1	Wheat	golgi	66.96	65.43
EES19888	Sorghum	cytosol	66.96	64.87
TraesCS1A01G365800.1	Wheat	cytosol	66.37	64.86
TraesCS1D01G371200.2	Wheat	cytosol	66.96	64.33
TraesCS3D01G258500.1	Wheat	cytosol	64.62	62.78
TraesCS3A01G258600.1	Wheat	cytosol	64.62	62.61
TraesCS3A01G254300.1	Wheat	cytosol	64.33	62.15
Zm00001d009431_P001	Maize	cytosol	67.54	57.75
Os04t0657300-00	Rice	cytosol, nucleus	2.92	50.0
TraesCS2A01G501900.1	Wheat	cytosol	57.02	47.56
TraesCS2B01G530100.1	Wheat	cytosol	56.73	47.32
TraesCS2D01G502400.1	Wheat	cytosol	56.73	47.32
KXG27307	Sorghum	cytosol	52.63	44.44
HORVU1Hr1G043190.1	Barley	extracellular	14.04	42.11

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:102599350	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1CX22	PFAM:PF00348	EnsemblPlantsGene:PGSC0003DMG400029788	PGSC:PGSC0003DMG400029788
EnsemblPlants:PGSC0003DMT400076602	ScanProsite:PS00444	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI000295AA02	RefSeq:XP_006344903.1	SEG:seg	:	:

Description

Farnesyl pyrophosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400029788]

Coordinates

chr12:-:10169940..10174778

Molecular Weight (calculated)

39299.4 Da

IEP (calculated)

4.869

GRAVY (calculated)

-0.139

Length

342 amino acids

Sequence
(BLAST)

001: MTDLKAKFLE VYSVLKSDLL KDPDFEFTDD SRQWVEKMLD YNVPGGKLNR GLSVIDSLSL LNDGKELSPD EIFKASALGW CIEWLQAYFL VLDDIMDGSH
101: TRRSQPCWYK LDKVGMIAIN DGILLRNHIT RILKKYFRPE PYYVDLLDLF NEVEFQTASG QMIDLITTLA GEKDLSKYSL SIHRRIVQYK TAYYSFYLPV
201: ACALLLAGEN LDNHVDVKKI LIDMGIYFQV QDDYLDCFAD PEVLGKIGTD IQDFKCSWLV VKALELCNEE QKKILFENYG KDDAACIAKI KALYNDLKLE
301: EVFLEYEKTS YENLTSSIAA HPSKAVQAVL LSFLGKIYKR QK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.