Factsheet for PGSC0003DMT400037236

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	72.55	89.52
PGSC0003DMT400022420	Potato	cytosol	82.35	73.68
PGSC0003DMT400076602	Potato	cytosol	75.82	67.84
VIT_19s0015g01010.t01	Wine grape	cytosol	73.86	66.28
GSMUA_Achr3P28530_001	Banana	cytosol	69.61	61.38
GSMUA_Achr9P22220_001	Banana	cytosol	71.24	61.06
Os04t0657300-00	Rice	cytosol, nucleus	3.92	60.0
EES01337	Sorghum	cytosol	67.97	58.43
Zm00001d043727_P001	Maize	cytosol	67.65	58.31
Zm00001d011673_P001	Maize	cytosol	67.32	58.03
TraesCS1B01G383400.1	Wheat	golgi	65.69	57.43
TraesCS3D01G255200.1	Wheat	cytosol	66.34	57.34
TraesCS3B01G286300.2	Wheat	cytosol	66.34	57.34
TraesCS3A01G254300.1	Wheat	cytosol	66.34	57.34
TraesCS1A01G365800.1	Wheat	cytosol	65.03	56.86
TraesCS1D01G371200.2	Wheat	cytosol	65.69	56.46
EES19888	Sorghum	cytosol	65.03	56.37
TraesCS3A01G258600.1	Wheat	cytosol	62.09	53.82
TraesCS3D01G258500.1	Wheat	cytosol	61.44	53.41
Zm00001d009431_P001	Maize	cytosol	65.69	50.25
TraesCS2D01G502400.1	Wheat	cytosol	53.92	40.24
TraesCS2B01G530100.1	Wheat	cytosol	53.92	40.24
TraesCS2A01G501900.1	Wheat	cytosol	53.92	40.24
KXG27307	Sorghum	cytosol	51.31	38.77
HORVU1Hr1G043190.1	Barley	extracellular	12.75	34.21

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:102578229	MapMan:9.1.3.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1B520	PFAM:PF00348	EnsemblPlantsGene:PGSC0003DMG400014369
PGSC:PGSC0003DMG400014369	EnsemblPlants:PGSC0003DMT400037236	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11
InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI000295DE57	RefSeq:XP_015166467.1	RefSeq:XP_015166468.1

Description

Dimethylallyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400014369]

Coordinates

chr10:+:871271..879652

Molecular Weight (calculated)

35200.5 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.329

Length

306 amino acids

Sequence
(BLAST)

001: MLNHNLLGGK LNRGLSAIDS YSLLKEGKQL TSEEIIQISS LGWCIEWLQG YFLVHDDIMD GSSKRRGQPC WFRLSEVGMI AVNDGILLRN HIAVILKQHF
101: RGKPYYVDLL ELFNEVEYQT ASGQMIDLIT TKGRDLSKYS LPVHRRIVQY KTAYYSFYLP VACALLMAGE NLDNHANGKD ILIKMGIYFQ VQDDYLDCFA
201: DPRVLGKNGT DIKDFKCSWL VVKALELCNE EQRKLLDENY GQDDGACVAK IKALYKDLKL EDVYQEYENN TYEELKNSIE DQETKLSKAM QAVLKSFLAK
301: IYKRKK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.