Factsheet for GSMUA_Achr9P22220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28530_001	Banana	cytosol	87.39	89.91
KRH11625	Soybean	cytosol, nucleus	76.19	79.53
KRH36635	Soybean	cytosol, nucleus	75.35	78.66
VIT_19s0015g01010.t01	Wine grape	cytosol	75.07	78.59
PGSC0003DMT400022420	Potato	cytosol	72.83	76.02
CDX77796	Canola	cytosol	71.99	74.93
CDY17706	Canola	cytosol	71.99	74.93
Bra022156.1-P	Field mustard	cytosol	70.59	73.68
CDY28904	Canola	cytosol	70.59	73.68
Solyc10g005820.1.1	Tomato	cytosol	24.37	73.11
AT4G17190.1	Thale cress	cytosol	70.03	73.1
PGSC0003DMT400076602	Potato	cytosol	68.91	71.93
Solyc12g015860.1.1	Tomato	cytosol, plastid	68.63	71.64
KRH63452	Soybean	cytosol	24.37	71.31
PGSC0003DMT400037236	Potato	cytosol	61.06	71.24
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	48.18	69.35
Bra024917.1-P	Field mustard	mitochondrion	70.31	67.47
AT5G47770.1	Thale cress	cytosol, mitochondrion	71.15	66.15
CDY68039	Canola	cytosol, mitochondrion, plastid	71.15	65.8
HORVU2Hr1G111540.10	Barley	cytosol, plasma membrane	60.5	62.25
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	44.54	59.11
KRH30637	Soybean	cytosol	14.57	59.09
KRG89761	Soybean	cytosol	35.85	57.14
TraesCS2D01G502400.1	Wheat	cytosol	60.22	52.44
TraesCS2A01G501900.1	Wheat	cytosol	59.94	52.2
TraesCS2B01G530100.1	Wheat	cytosol	59.94	52.2
Os04t0657100-01	Rice	cytosol	53.22	48.47
KXG27307	Sorghum	cytosol	54.34	47.9

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G22220_001
EnsemblPlants:GSMUA_Achr9P22220_001	EnsemblPlants:GSMUA_Achr9T22220_001	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M0U2I1	PFAM:PF00348
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI000295CCF7	SEG:seg	:	:	:

Description

Farnesyl pyrophosphate synthase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22220_001]

Coordinates

chr9:+:27342089..27347129

Molecular Weight (calculated)

40781.9 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.186

Length

357 amino acids

Sequence
(BLAST)

001: MAAAGTNGAV VVVVGEGDLK ATFRQIYDRL KSELLQDDAF DCTDEARQWI DRMLDYNVPG GKLNRGLSVI DSYKLLKEGN QLNDEEVFLG CALGWCIEWL
101: QAYFLVLDDI MDNSHTRRGQ LCWFRVPKVG LIAVNDGILL RNHIPRILKR HFKGKPYYVD LLDLFNEVEF QTASGQMLDL ITTHEGEKDL SKYTLPVYNR
201: IVQYKTAYYS FYLPVACALL MAGENLDTFV DVKNILVEMG TYFQVQDDFL DCFGDPEVIG KIGTDIEDFK CSWLVVQALQ RANENQMKTL SEIYGKSDPT
301: CVAKVKSIYK DLDLQNVFAE YERTSYEHLI SSIEAQPSKA VQGVLKSFLQ KIYKREK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.