Factsheet for Solyc12g015860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076602	Potato	cytosol	93.57	93.57
Solyc10g005820.1.1	Tomato	cytosol	29.24	84.03
VIT_19s0015g01010.t01	Wine grape	cytosol	77.78	78.01
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	55.26	76.21
GSMUA_Achr3P28530_001	Banana	cytosol	71.05	70.03
GSMUA_Achr9P22220_001	Banana	cytosol	71.64	68.63
Zm00001d043727_P001	Maize	cytosol	69.3	66.76
EES01337	Sorghum	cytosol	68.71	66.01
TraesCS3B01G286300.2	Wheat	cytosol	68.13	65.82
Zm00001d011673_P001	Maize	cytosol	68.13	65.63
TraesCS3D01G255200.1	Wheat	cytosol	67.25	64.97
TraesCS1B01G383400.1	Wheat	golgi	66.37	64.86
EES19888	Sorghum	cytosol	66.67	64.59
TraesCS1A01G365800.1	Wheat	cytosol	66.08	64.57
TraesCS1D01G371200.2	Wheat	cytosol	66.67	64.04
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	49.12	62.45
TraesCS3A01G258600.1	Wheat	cytosol	64.33	62.32
TraesCS3D01G258500.1	Wheat	cytosol	64.04	62.22
TraesCS3A01G254300.1	Wheat	cytosol	63.45	61.3
Zm00001d009431_P001	Maize	cytosol	66.96	57.25
Os04t0657300-00	Rice	cytosol, nucleus	2.92	50.0
TraesCS2A01G501900.1	Wheat	cytosol	55.85	46.59
TraesCS2B01G530100.1	Wheat	cytosol	55.85	46.59
TraesCS2D01G502400.1	Wheat	cytosol	55.85	46.59
KXG27307	Sorghum	cytosol	52.05	43.95
HORVU1Hr1G043190.1	Barley	extracellular	14.04	42.11

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	EMBL:AF048747	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161
GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0045337	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:O65004	PFAM:PF00348	ScanProsite:PS00444
ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576
EnsemblPlantsGene:Solyc12g015860.1	EnsemblPlants:Solyc12g015860.1.1	UniParc:UPI00000ACC33	:	:	:

Description

Farnesyl pyrophosphate synthase [Source:UniProtKB/TrEMBL;Acc:O65004]

Coordinates

chr12:-:5832999..5836983

Molecular Weight (calculated)

39336.7 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.110

Length

342 amino acids

Sequence
(BLAST)

001: MADLKKKFLD VYSVLKSDLL EDTAFEFTDD SRKWVDKMLD YNVPGGKLNR GLSVIDSLSL LKDGKELTAD EIFKASALGW CIEWLQAYFL VLDDIMDGSH
101: TRRGQPCWYN LEKVGMIAIN DGILLRNHIT RILKKYFRPE SYYVDLLDLF NEVEFQTASG QMIDLITTLV GEKDLSKYSL SIHRRIVQYK TAYYSFYLPV
201: ACALLMVGEN LDKHVDVKKI LIDMGIYFQV QDDYLDCFAD PEVLGKIGTD IQDFKCSWLV VKALELCNEE QKKILFENYG KDNAACIAKI KALYNDLKLE
301: EVFLEYEKTS YEKLTTSIAA HPSKAVQAVL LSFLGKIYKR QK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.