CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043727_P001	Maize	cytosol	92.98	93.24
Zm00001d011673_P001	Maize	cytosol	91.85	92.11
Os01t0703400-01	Rice	cytosol, mitochondrion	89.04	89.8
HORVU2Hr1G073510.1	Barley	cytosol	16.85	89.55
TraesCS3B01G286300.2	Wheat	cytosol	88.2	88.7
HORVU3Hr1G065960.4	Barley	cytosol	87.92	88.17
TraesCS3D01G255200.1	Wheat	cytosol	87.08	87.57
EES19888	Sorghum	cytosol	82.87	83.57
TraesCS3A01G254300.1	Wheat	cytosol	82.58	83.05
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	41.01	79.35
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	40.73	78.8
VIT_19s0015g01010.t01	Wine grape	cytosol	71.63	74.78
KRH11625	Soybean	cytosol, nucleus	71.63	74.56
Solyc10g005820.1.1	Tomato	cytosol	24.72	73.95
KRH36635	Soybean	cytosol, nucleus	70.79	73.68
CDY17706	Canola	cytosol	70.79	73.47
CDX77796	Canola	cytosol	70.51	73.18
AT4G17190.1	Thale cress	cytosol	69.38	72.22
Bra022156.1-P	Field mustard	cytosol	69.38	72.22
CDY28904	Canola	cytosol	69.38	72.22
PGSC0003DMT400022420	Potato	cytosol	68.54	71.34
PGSC0003DMT400076602	Potato	cytosol	67.13	69.88
KRH63452	Soybean	cytosol	23.6	68.85
Solyc12g015860.1.1	Tomato	cytosol, plastid	66.01	68.71
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	47.47	68.15
PGSC0003DMT400037236	Potato	cytosol	58.43	67.97
Bra024917.1-P	Field mustard	mitochondrion	68.26	65.32
AT5G47770.1	Thale cress	cytosol, mitochondrion	69.66	64.58
CDY68039	Canola	cytosol, mitochondrion, plastid	69.94	64.51
KRH30637	Soybean	cytosol	14.89	60.23
KRG89761	Soybean	cytosol	33.99	54.02
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	40.17	53.16
KXG27307	Sorghum	cytosol	51.12	44.94

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:8068071	MapMan:9.1.3.2	UniProt:C5XHL1	EnsemblPlants:EES01337	ProteinID:EES01337
ProteinID:EES01337.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004161	GO:GO:0004337	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0045337	InterPro:IPR008949
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11
InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	EnsemblPlantsGene:SORBI_3003G270500	SUPFAM:SSF48576	unigene:Sbi.15539	UniParc:UPI0001A847B5
RefSeq:XP_002456217.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:60723789..60728310

Molecular Weight (calculated)

40790.8 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.242

Length

356 amino acids

Sequence
(BLAST)

001: MATAEVVVVA NGSGGADTKA AFKETYSKLK EEMLQDPAFE FTDESLQWID RMVDYNVLGG KCNRGLSVID SYKILKGVDV LSKEETFLAC TLGWCIEWLQ
101: AYFLVLDDIM DNSQTRRGQP CWFRVPQVGL IAVNDGIILR NHISRILQRH FKGKPYYVDL IDLFNEVEFK TASGQLLDLI TTHEGEKDLT KYNLTVHRRI
201: VQYKTAYYSF YLPVACALLL AGENLDNFGD VKNILVEMGT YFQVQDDYLD CFGDPEFIGK IGTDIEDYKC SWLVVQALER ADENQKSILC ENYGKSDPAC
301: VAKVKDLYKE LKLEEVFHEY ERESYNKLIA DIEAQPSKAV QTVLKSFLHK IYKRDK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.