Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G080750.1 | Barley | endoplasmic reticulum, plasma membrane | 94.02 | 94.02 |
| HORVU2Hr1G073510.1 | Barley | cytosol | 32.07 | 88.06 |
| HORVU1Hr1G043190.1 | Barley | extracellular | 33.7 | 54.39 |
| HORVU3Hr1G065960.4 | Barley | cytosol | 81.52 | 42.25 |
| TraesCS3A01G254300.1 | Wheat | cytosol | 80.98 | 42.09 |
| TraesCS3B01G286300.2 | Wheat | cytosol | 80.98 | 42.09 |
| TraesCS3D01G255200.1 | Wheat | cytosol | 80.98 | 42.09 |
| EES01337 | Sorghum | cytosol | 78.8 | 40.73 |
| Zm00001d043727_P001 | Maize | cytosol | 78.26 | 40.56 |
| Os01t0703400-01 | Rice | cytosol, mitochondrion | 77.17 | 40.23 |
| Zm00001d011673_P001 | Maize | cytosol | 77.17 | 40.0 |
| HORVU1Hr1G079070.1 | Barley | cytosol | 69.02 | 38.6 |
| HORVU3Hr1G065190.1 | Barley | cytosol | 56.52 | 29.46 |
| HORVU2Hr1G111540.10 | Barley | cytosol, plasma membrane | 46.74 | 24.78 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G033960.1 | EnsemblPlantsGene:HORVU6Hr1G033960 | Gene3D:1.10.600.10 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | InterPro:Polyprenyl_synt |
| InterPro:Polyprenyl_synt_CS | PANTHER:PTHR11525 | PANTHER:PTHR11525:SF11 | PFAM:PF00348 | ScanProsite:PS00723 | SignalP:SignalP-noTM |
| SUPFAM:SSF48576 | UniParc:UPI000B47EF3B | UniProt:A0A287TW48 | MapMan:9.1.3.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:156944571..156946117
Molecular Weight (calculated)
21363.3 Da
IEP (calculated)
8.992
GRAVY (calculated)
0.090
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: LMIKSVTIVL FKWRIVRLAV VSMLDYNVLG GKCNRGLSVI DSYKTLKGVD VLSKEETFLA CTLGWCIEWL QAYFLVLDDI MDNSQTRRGQ PCWFRVPQVG
101: LIAVNDGIIL RNHISWILQR HFRGKPYYVD LIDLFNEVEF KTASGKLLDL ITTHKGEKDL TKYNLNVHRR AFQCITCLHL YSYN
101: LIAVNDGIIL RNHISWILQR HFRGKPYYVD LIDLFNEVEF KTASGKLLDL ITTHKGEKDL TKYNLNVHRR AFQCITCLHL YSYN
001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK
Arabidopsis Description
FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.