Factsheet for HORVU2Hr1G111540.10

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G502400.1	Wheat	cytosol	98.27	83.17
TraesCS2A01G501900.1	Wheat	cytosol	97.69	82.68
TraesCS2B01G530100.1	Wheat	cytosol	97.69	82.68
GSMUA_Achr3P28530_001	Banana	cytosol	60.81	60.81
GSMUA_Achr9P22220_001	Banana	cytosol	62.25	60.5
HORVU2Hr1G073510.1	Barley	cytosol	11.24	58.21
HORVU1Hr1G079070.1	Barley	cytosol	53.6	56.53
HORVU3Hr1G065190.1	Barley	cytosol	56.2	55.24
HORVU3Hr1G065960.4	Barley	cytosol	56.2	54.93
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	25.07	47.28
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	24.78	46.74
HORVU1Hr1G043190.1	Barley	extracellular	12.68	38.6

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	UniProt:A0A287JFW9	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:HORVU2Hr1G111540	EnsemblPlants:HORVU2Hr1G111540.10	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF00348
ScanProsite:PS00444	PANTHER:PTHR11525	PANTHER:PTHR11525:SF2	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576
UniParc:UPI000B47E649	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:723105257..723108421

Molecular Weight (calculated)

40625.0 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.257

Length

347 amino acids

Sequence
(BLAST)

001: EQGAQQTRER FLRAYERLKD ELLNDRAFNF DFTDETRQWV AKMLDYNVPG GKLNRGLSVI DSYMLLREGT EVDDEDFYLA CVLGWCIEWL QASALVLDDI
101: TDNAYTRRDN LCWYKLPTVG LSAINDGVLL KCHVQAIIKR YFKEKFYFME LMELWNEIGL QTAMGQMLDL ITTHTGAKDL ARYRIQGYRR IVKYKTSYYS
201: FYLPVACALL LNGAKLSDYV ELKNVLIEMG VYFQIQDDYL DCFGDPQVIG KVGTDIEDYK CSWLIVQAME LANENEMKIL YENYGKSSPE CVAAVKNVYK
301: ELDLQDIFLE YESRVYKHLV STIDAEPDRA IREILKIFLK KIYRRKK

Best Arabidopsis Sequence Match ( AT4G17190.1 )
(BLAST)

001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.