Factsheet for TraesCS3A01G254300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G255200.1	Wheat	cytosol	90.68	90.68
TraesCS3B01G286300.2	Wheat	cytosol	88.7	88.7
HORVU3Hr1G065960.4	Barley	cytosol	87.85	87.61
HORVU2Hr1G073510.1	Barley	cytosol	16.38	86.57
EES01337	Sorghum	cytosol	83.05	82.58
Os01t0703400-01	Rice	cytosol, mitochondrion	81.07	81.3
HORVU6Hr1G033960.1	Barley	endoplasmic reticulum	42.09	80.98
Zm00001d011673_P001	Maize	cytosol	80.79	80.56
Zm00001d043727_P001	Maize	cytosol	80.23	80.0
HORVU7Hr1G080750.1	Barley	endoplasmic reticulum, plasma membrane	41.53	79.89
TraesCS1A01G365800.1	Wheat	cytosol	75.14	76.0
Solyc10g005820.1.1	Tomato	cytosol	23.73	70.59
KRH11625	Soybean	cytosol, nucleus	67.23	69.59
KRH36635	Soybean	cytosol, nucleus	66.38	68.71
VIT_19s0015g01010.t01	Wine grape	cytosol	66.1	68.62
CDY17706	Canola	cytosol	66.1	68.22
CDX77796	Canola	cytosol	66.1	68.22
KRH63452	Soybean	cytosol	23.45	68.03
CDY28904	Canola	cytosol	65.54	67.84
Bra022156.1-P	Field mustard	cytosol	65.54	67.84
AT4G17190.1	Thale cress	cytosol	65.25	67.54
PGSC0003DMT400022420	Potato	cytosol	64.12	66.37
PGSC0003DMT400037236	Potato	cytosol	57.34	66.34
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	46.33	66.13
PGSC0003DMT400076602	Potato	cytosol	62.15	64.33
TraesCS3A01G258600.1	Wheat	cytosol	64.12	64.31
Solyc12g015860.1.1	Tomato	cytosol, plastid	61.3	63.45
KRH30637	Soybean	cytosol	15.25	61.36
Bra024917.1-P	Field mustard	mitochondrion	64.12	61.02
CDY68039	Canola	cytosol, mitochondrion, plastid	66.1	60.62
AT5G47770.1	Thale cress	cytosol, mitochondrion	65.54	60.42
KRG89761	Soybean	cytosol	33.62	53.12
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	37.57	49.44
TraesCS2A01G501900.1	Wheat	cytosol	51.98	44.88

Protein Annotations

EnsemblPlants:TraesCS3A01G254300.1	EnsemblPlantsGene:TraesCS3A01G254300	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	ncoils:Coil	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	PFAM:PF00348	ScanProsite:PS00444
ScanProsite:PS00723	SEG:seg	SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:

Description

No Description!

Coordinates

chr3A:-:475732865..475737002

Molecular Weight (calculated)

37227.5 Da

IEP (calculated)

5.028

GRAVY (calculated)

-0.235

Length

354 amino acids

Sequence
(BLAST)

001: MAAAAVALSN GSGGDSKAEF AEXXXXXXXX XXXXXXXXXX XXXXXXXXXM LDYNVLGGKC NRGLSVIDSY KTLKGVDVLR KEETFLACTL GWCIEWLQAY
101: FLVLDDIMDN SQTRRGQPCW FRVPQVGLIA VNDGIILRNH ISRILQRHFR GKPYYVDLID LFNEVEFKTA SGQLLDLITT HEGEKDLTKY NLNVHRRIVQ
201: YKTAYYSFYL PVACALLLSG ENLDNFGDVK NILVEMGTYF QVQDDYLDCF GDPESIGKIG TDIEDYKCSW LVVQALEHAD ESQKGILLEN YGKSDPESVA
301: KVKDLYKELD LETAFHKYER ESYNKLIADI EAQPSKAVQK VLMSFLEKIY KRQK

Best Arabidopsis Sequence Match ( AT4G17190.3 )
(BLAST)

001: MLDYNVRGGK LNRGLSVVDS YKLLKQGQDL TEKETFLSCA LGWCIEWLQA YFLVLDDIMD NSVTRRGQPC WFRKPKVGMI AINDGILLRN HIHRILKKHF
101: REMPYYVDLV DLFNEVEFQT ACGQMIDLIT TFDGEKDLSK YSLQIHRRIV EYKTAYYSFY LPVACALLMA GENLENHTDV KTVLVDMGIY FQVQDDYLDC
201: FADPETLGKI GTDIEDFKCS WLVVKALERC SEEQTKILYE NYGKAEPSNV AKVKALYKEL DLEGAFMEYE KESYEKLTKL IEAHQSKAIQ AVLKSFLAKI
301: YKRQK

Arabidopsis Description

FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.