Factsheet for Bra022156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28904	Canola	cytosol	100.0	100.0
Bra024917.1-P	Field mustard	mitochondrion	90.94	83.6
AT5G47770.1	Thale cress	cytosol, mitochondrion	93.86	83.59
KRH11625	Soybean	cytosol, nucleus	79.82	79.82
KRH36635	Soybean	cytosol, nucleus	79.24	79.24
GSMUA_Achr3P28530_001	Banana	cytosol	73.1	72.05
GSMUA_Achr9P22220_001	Banana	cytosol	73.68	70.59
Zm00001d043727_P001	Maize	cytosol	73.1	70.42
KRH63452	Soybean	cytosol	24.85	69.67
EES01337	Sorghum	cytosol	72.22	69.38
TraesCS3D01G255200.1	Wheat	cytosol	71.34	68.93
TraesCS3B01G286300.2	Wheat	cytosol	71.34	68.93
TraesCS1B01G383400.1	Wheat	golgi	70.18	68.57
EES19888	Sorghum	cytosol	70.76	68.56
TraesCS1A01G365800.1	Wheat	cytosol	69.88	68.29
Zm00001d011673_P001	Maize	cytosol	70.76	68.17
TraesCS1D01G371200.2	Wheat	cytosol	70.47	67.7
TraesCS3A01G254300.1	Wheat	cytosol	67.84	65.54
TraesCS3D01G258500.1	Wheat	cytosol	64.33	62.5
KRH30637	Soybean	cytosol	16.08	62.5
TraesCS3A01G258600.1	Wheat	cytosol	64.33	62.32
Zm00001d009431_P001	Maize	cytosol	71.64	61.25
Os04t0657300-00	Rice	cytosol, nucleus	3.51	60.0
KRG89761	Soybean	cytosol	37.13	56.7
TraesCS2A01G501900.1	Wheat	cytosol	57.89	48.29
TraesCS2D01G502400.1	Wheat	cytosol	57.89	48.29
TraesCS2B01G530100.1	Wheat	cytosol	57.89	48.29
KXG27307	Sorghum	cytosol	54.39	45.93
HORVU1Hr1G043190.1	Barley	extracellular	14.91	44.74

Protein Annotations

Gene3D:1.10.600.10	MapMan:9.1.3.2	EnsemblPlantsGene:Bra022156	EnsemblPlants:Bra022156.1	EnsemblPlants:Bra022156.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4E059	PFAM:PF00348
ScanProsite:PS00444	ScanProsite:PS00723	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS
SUPFAM:SSF48576	UniParc:UPI0002546313	:	:	:	:

Description

AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase

Coordinates

chrA02:+:19714340..19716116

Molecular Weight (calculated)

39524.6 Da

IEP (calculated)

4.991

GRAVY (calculated)

-0.214

Length

342 amino acids

Sequence
(BLAST)

001: MADLKSTFLN VYSTLKSDLL HDPSFEFTEE SRLWVEKMLD YNVPGGKLNR GLSVVDSFKL LKEGEDLTEE EVFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR VPQVGMVAIN DGILLRNHIH RILKKHFRGK PYYVDLVDLF NEVEMQTACG QMIDLITTFE GEKDLAKYSL PIHRRIVQYK TAYYSFYLPV
201: ACALLMAGED LENHIDVKNV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSKE QTEILYENYG KPDPSNVAKV KELYKELDLE
301: GVFKEYESKS YEKLTGVIEA HKSKAIQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.