CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11625	Soybean	cytosol, nucleus	96.49	96.49
KRH63452	Soybean	cytosol	33.63	94.26
KRH30637	Soybean	cytosol	21.34	82.95
CDX77796	Canola	cytosol	79.82	79.59
CDY17706	Canola	cytosol	79.82	79.59
Bra022156.1-P	Field mustard	cytosol	79.24	79.24
CDY28904	Canola	cytosol	79.24	79.24
AT4G17190.1	Thale cress	cytosol	77.78	77.78
GSMUA_Achr3P28530_001	Banana	cytosol	77.78	76.66
GSMUA_Achr9P22220_001	Banana	cytosol	78.66	75.35
Bra024917.1-P	Field mustard	mitochondrion	77.49	71.24
Zm00001d043727_P001	Maize	cytosol	73.68	70.99
EES01337	Sorghum	cytosol	73.68	70.79
TraesCS3B01G286300.2	Wheat	cytosol	73.1	70.62
KRG89761	Soybean	cytosol	46.2	70.54
Zm00001d011673_P001	Maize	cytosol	73.1	70.42
EES19888	Sorghum	cytosol	72.51	70.25
CDY68039	Canola	cytosol, mitochondrion, plastid	79.24	70.21
AT5G47770.1	Thale cress	cytosol, mitochondrion	78.66	70.05
TraesCS3D01G255200.1	Wheat	cytosol	72.22	69.77
TraesCS1A01G365800.1	Wheat	cytosol	71.34	69.71
TraesCS1B01G383400.1	Wheat	golgi	71.34	69.71
TraesCS1D01G371200.2	Wheat	cytosol	71.64	68.82
TraesCS3A01G254300.1	Wheat	cytosol	68.71	66.38
TraesCS3A01G258600.1	Wheat	cytosol	67.54	65.44
TraesCS3D01G258500.1	Wheat	cytosol	66.96	65.06
Zm00001d009431_P001	Maize	cytosol	72.81	62.25
Os04t0657300-00	Rice	cytosol, nucleus	3.22	55.0
TraesCS2A01G501900.1	Wheat	cytosol	59.36	49.51
TraesCS2B01G530100.1	Wheat	cytosol	59.36	49.51
TraesCS2D01G502400.1	Wheat	cytosol	59.36	49.51
KXG27307	Sorghum	cytosol	54.68	46.17
HORVU1Hr1G043190.1	Barley	extracellular	14.62	43.86

Protein Annotations

Gene3D:1.10.600.10	EntrezGene:100802347	MapMan:9.1.3.2	EMBL:ACUP02005385	EnsemblPlantsGene:GLYMA_09G015600	GO:GO:0003674
GO:GO:0003824	GO:GO:0004161	GO:GO:0004337	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0045337	UniProt:I1L053	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
EnsemblPlants:KRH36635	ProteinID:KRH36635	ProteinID:KRH36635.1	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723
PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	InterPro:Polyprenyl_synt	InterPro:Polyprenyl_synt_CS	SUPFAM:SSF48576	UniParc:UPI000233D1EC

Description

hypothetical protein

Coordinates

chr9:+:1194736..1198740

Molecular Weight (calculated)

39252.2 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.228

Length

342 amino acids

Sequence
(BLAST)

001: MADLKSTFLN VYSVLKSELL HDPAFEFSDD ARHWVDRMLD YNVPGGKLNR GLSVIDSYRL LKEGQALNDD EIFLASALGW CIEWLQAYFL VLDDIMDNSH
101: TRRGQPCWFR VPKVGMIAAN DGVLLRNHIP RILRKHFRGK PYYIDLLDLF NEVEFQTASG QMIDLITTLE GEKDLSKYTL TLHRRIVQYK TAYYSFYLPV
201: ACALLMAGED LDKNVDVKNI LVEMGTYFQV QDDYLDCFGD PQTIGKIGTD IEDFKCSWLI VKALELSNEQ QKKVLQENYG KPDPENVAKV KALYNELNLQ
301: GVFEEYESGS YAKLVSSIEA HPIKAVQAVL KSFLAKIYKR QK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.