Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G47770.1 | Thale cress | cytosol, mitochondrion | 90.35 | 80.47 |
| KRH11625 | Soybean | cytosol, nucleus | 79.24 | 79.24 |
| KRH36635 | Soybean | cytosol, nucleus | 77.78 | 77.78 |
| GSMUA_Achr3P28530_001 | Banana | cytosol | 72.51 | 71.47 |
| Zm00001d043727_P001 | Maize | cytosol | 72.81 | 70.14 |
| GSMUA_Achr9P22220_001 | Banana | cytosol | 73.1 | 70.03 |
| TraesCS3B01G286300.2 | Wheat | cytosol | 72.22 | 69.77 |
| KRH63452 | Soybean | cytosol | 24.85 | 69.67 |
| EES01337 | Sorghum | cytosol | 72.22 | 69.38 |
| TraesCS3D01G255200.1 | Wheat | cytosol | 71.05 | 68.64 |
| Zm00001d011673_P001 | Maize | cytosol | 70.47 | 67.89 |
| TraesCS1B01G383400.1 | Wheat | golgi | 69.01 | 67.43 |
| TraesCS1A01G365800.1 | Wheat | cytosol | 68.71 | 67.14 |
| EES19888 | Sorghum | cytosol | 69.3 | 67.14 |
| TraesCS1D01G371200.2 | Wheat | cytosol | 69.3 | 66.57 |
| KRH30637 | Soybean | cytosol | 16.96 | 65.91 |
| TraesCS3A01G254300.1 | Wheat | cytosol | 67.54 | 65.25 |
| TraesCS3A01G258600.1 | Wheat | cytosol | 65.2 | 63.17 |
| TraesCS3D01G258500.1 | Wheat | cytosol | 64.91 | 63.07 |
| Zm00001d009431_P001 | Maize | cytosol | 70.76 | 60.5 |
| Os04t0657300-00 | Rice | cytosol, nucleus | 3.51 | 60.0 |
| KRG89761 | Soybean | cytosol | 36.55 | 55.8 |
| TraesCS2D01G502400.1 | Wheat | cytosol | 56.73 | 47.32 |
| TraesCS2B01G530100.1 | Wheat | cytosol | 56.73 | 47.32 |
| TraesCS2A01G501900.1 | Wheat | cytosol | 56.73 | 47.32 |
| KXG27307 | Sorghum | cytosol | 53.51 | 45.19 |
| HORVU1Hr1G043190.1 | Barley | extracellular | 14.91 | 44.74 |
Protein Annotations
| Gene3D:1.10.600.10 | EntrezGene:827430 | MapMan:9.1.3.2 | UniProt:A0A178UUX8 | ProteinID:AAB07247.1 | ProteinID:AEE83860.1 |
| ProteinID:ANM66646.1 | ArrayExpress:AT4G17190 | EnsemblPlantsGene:AT4G17190 | RefSeq:AT4G17190 | TAIR:AT4G17190 | RefSeq:AT4G17190-TAIR-G |
| EnsemblPlants:AT4G17190.1 | TAIR:AT4G17190.1 | EMBL:AY072207 | EMBL:AY117354 | Unigene:At.21195 | ProteinID:CAB10500.1 |
| ProteinID:CAB80990.1 | Symbol:FPS2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004161 | GO:GO:0004337 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0006695 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008202 |
| GO:GO:0008203 | GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016126 | GO:GO:0016740 |
| GO:GO:0033384 | GO:GO:0045337 | GO:GO:0046872 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | EMBL:L46349 |
| RefSeq:NP_001328530.1 | RefSeq:NP_193452.1 | ProteinID:OAO97157.1 | PFAM:PF00348 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00444 |
| ScanProsite:PS00723 | PANTHER:PTHR11525 | PANTHER:PTHR11525:SF11 | InterPro:Polyprenyl_synt | InterPro:Polyprenyl_synt_CS | UniProt:Q43315 |
| SUPFAM:SSF48576 | UniParc:UPI000000179E | : | : | : | : |
Description
FPS2Farnesyl pyrophosphate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43315]
Coordinates
chr4:-:9648467..9650912
Molecular Weight (calculated)
39828.0 Da
IEP (calculated)
5.503
GRAVY (calculated)
-0.276
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLKSTFLD VYSVLKSDLL QDPSFEFTHE SRQWLERMLD YNVRGGKLNR GLSVVDSYKL LKQGQDLTEK ETFLSCALGW CIEWLQAYFL VLDDIMDNSV
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK
101: TRRGQPCWFR KPKVGMIAIN DGILLRNHIH RILKKHFREM PYYVDLVDLF NEVEFQTACG QMIDLITTFD GEKDLSKYSL QIHRRIVEYK TAYYSFYLPV
201: ACALLMAGEN LENHTDVKTV LVDMGIYFQV QDDYLDCFAD PETLGKIGTD IEDFKCSWLV VKALERCSEE QTKILYENYG KAEPSNVAKV KALYKELDLE
301: GAFMEYEKES YEKLTKLIEA HQSKAIQAVL KSFLAKIYKR QK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.