Factsheet for TraesCS1B01G383400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365800.1	Wheat	cytosol	96.29	96.29
TraesCS1D01G371200.2	Wheat	cytosol	96.57	94.94
HORVU1Hr1G079070.1	Barley	cytosol	88.29	93.92
EES19888	Sorghum	cytosol	87.71	86.97
Os05t0543400-01	Rice	cytosol	83.43	82.25
TraesCS3B01G286300.2	Wheat	cytosol	81.43	80.51
Zm00001d009431_P001	Maize	cytosol	88.57	77.5
VIT_19s0015g01010.t01	Wine grape	cytosol	70.0	71.85
KRH11625	Soybean	cytosol, nucleus	70.0	71.64
Solyc10g005820.1.1	Tomato	cytosol	24.29	71.43
KRH36635	Soybean	cytosol, nucleus	69.71	71.34
CDY17706	Canola	cytosol	69.43	70.85
CDX77796	Canola	cytosol	69.14	70.55
CDY28904	Canola	cytosol	68.57	70.18
Bra022156.1-P	Field mustard	cytosol	68.57	70.18
AT4G17190.1	Thale cress	cytosol	67.43	69.01
PGSC0003DMT400022420	Potato	cytosol	67.14	68.71
PGSC0003DMT400076602	Potato	cytosol	65.43	66.96
KRH63452	Soybean	cytosol	23.14	66.39
Solyc12g015860.1.1	Tomato	cytosol, plastid	64.86	66.37
PGSC0003DMT400037236	Potato	cytosol	57.43	65.69
Solyc10g005840.2.1	Tomato	cytosol, mitochondrion	46.0	64.92
Bra024917.1-P	Field mustard	mitochondrion	66.86	62.9
AT5G47770.1	Thale cress	cytosol, mitochondrion	68.86	62.76
CDY68039	Canola	cytosol, mitochondrion, plastid	68.29	61.92
KRH30637	Soybean	cytosol	14.0	55.68
KRG89761	Soybean	cytosol	33.14	51.79
Solyc10g005810.2.1	Tomato	cytosol, mitochondrion	39.71	51.67
TraesCS2B01G530100.1	Wheat	cytosol	57.14	48.78

Protein Annotations

EnsemblPlants:TraesCS1B01G383400.1	EnsemblPlantsGene:TraesCS1B01G383400	Gene3D:1.10.600.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Polyprenyl_synt
InterPro:Polyprenyl_synt_CS	PANTHER:PTHR11525	PANTHER:PTHR11525:SF11	PFAM:PF00348	ScanProsite:PS00444	ScanProsite:PS00723
SUPFAM:SSF48576	TIGR:cd00685	MapMan:9.1.3.2	:	:	:

Description

No Description!

Coordinates

chr1B:-:615125849..615129012

Molecular Weight (calculated)

40033.8 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.238

Length

350 amino acids

Sequence
(BLAST)

001: MAAAENGGGG ESKAAFARIY DALKAELLRD PAFEYTESSH EWIDRMLDYN VLGGKCNRGL SVVDSYKLLK GVDVLSEEEM FLASTLGWCI EWLQAFFLVL
101: DDIMDDSHTR RGQPCWFRVS RVGLIAVNDG ILLRNHISRM LRLHFKKKPY YADLLDLFNE VEFKTASGQM LDLITTHEGE KDLTKYNIGV HRRIVQFKTA
201: YYSFYLPVAC ALLLSGESLE NYGAVENILV EMGTYFQVQD DYLDCYGDPE FIGKIGTDIE DYKCSWLVVQ ALERADESQK SILFENYGKK DPACVAKVKD
301: LYKELDLEAV FHEYESESYK KLIAGIEAQP SDAVQKVLKS FLHKIYKRQK

Best Arabidopsis Sequence Match ( AT5G47770.1 )
(BLAST)

001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK

Arabidopsis Description

FPS1Farnesyl pyrophosphate synthase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09152]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.